View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9612_high_3 (Length: 677)
Name: NF9612_high_3
Description: NF9612
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9612_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 511; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 511; E-Value: 0
Query Start/End: Original strand, 23 - 621
Target Start/End: Original strand, 17507443 - 17508046
Alignment:
| Q |
23 |
ttattgttaatgaggaatgcaataggcttgcaaacttctatcttcagttccttcaacccggaatccagcaatattgcttgacatgctgctaaacaacctg |
122 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
17507443 |
ttattgttaatgaggaatgcaataggcttgcaaacttctatcttcagttccttcaacacggaatccagcaatattgcttgacatgctgctaaacaacctg |
17507542 |
T |
|
| Q |
123 |
ttatatattctgattcacatgttgagaaggctaccataagttgtttctttgtacaccatgatattggataattcataaacataaacaagtatcctaaagt |
222 |
Q |
| |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17507543 |
ctatatattctgattctcatgttgagaaggctaccataagttgtttctttgtacaccatgatattggataattcataaacataaacaagtatcctaaagt |
17507642 |
T |
|
| Q |
223 |
acttt--ctatcttgcttatttgagtaagcaattagattcatattttcttcattgacatttgtaggaaagagtatacaatagtataaagttcccttgatg |
320 |
Q |
| |
|
||||| ||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
17507643 |
actttttctatcttgcttttctgagtaagcaattagattcatattttcttcattgacatttgtaggaaagagtataccatagtataaagttcccttgatg |
17507742 |
T |
|
| Q |
321 |
tatctcataacccttttagcttcaagcatatgagagattataggtacacacataaacctactgattatatcaaagacataaactatatatgacctgctat |
420 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||| |
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|
| T |
17507743 |
tatctcataacccttttagcttcaagtatatgagagattataggtacactcataaacctactgattatatcaaagacataaactatatatggcctgctat |
17507842 |
T |
|
| Q |
421 |
tacacgtatatctcaatgatcctacaatttgtttgaacaatgtagggtcaactaactccttatcttcattctttacaagcttcatattcactttagctag |
520 |
Q |
| |
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||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||| |||||||| |||||| |
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|
| T |
17507843 |
tacacgtatatctcaatgatcgtacaatttgtttgaacaatgtaggatcaactaactcctcatcttcattctttacaagcttcagattcacttcagctag |
17507942 |
T |
|
| Q |
521 |
tgtagattcaagattgcagctcat---gttgaatctcatcggaatatcaatatattatttcttctaatgcattgctaaacctttcaaagttttagtgaat |
617 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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|
| T |
17507943 |
tgtagattcaagattgcagctcatcaggttgaatctcttcgaaatatcaatatattatttcttctaatgcattgctaaacctttcaaagtcttagtgaat |
17508042 |
T |
|
| Q |
618 |
tcca |
621 |
Q |
| |
|
|||| |
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|
| T |
17508043 |
tcca |
17508046 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 306 - 554
Target Start/End: Complemental strand, 1832003 - 1831752
Alignment:
| Q |
306 |
aaagttcccttgatgtatctcataacccttttagcttcaagcatatgagagattataggtacacacataaacctactgattatatcaaagacataaacta |
405 |
Q |
| |
|
|||||||||||||||| ||||||||| ||||||| | ||| | ||||||| || || | ||| | ||||||||| ||||||| ||| ||||| || |
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|
| T |
1832003 |
aaagttcccttgatgtttctcataactcttttagttgtaagaaaatgagagcttctaacttcactcttaaacctacagattataccaacatgataaatta |
1831904 |
T |
|
| Q |
406 |
tatatgacctgctattacacgtatatctcaatgatcctacaatttgtttgaacaatgtagggtcaactaactccttatcttcattctttacaagcttcat |
505 |
Q |
| |
|
|||||| |||||||||||| |||||||| ||| ||| ||||||||||| ||||||||||||||||| ||| | ||||||||||||||||||||| | |
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|
| T |
1831903 |
tatatggtctgctattacacagatatctcagagattctataatttgtttgatcaatgtagggtcaactagctcttcatcttcattctttacaagcttaag |
1831804 |
T |
|
| Q |
506 |
attcactttagctagtgtagattcaagattgcagc---tcatgttgaatctc |
554 |
Q |
| |
|
|||||||| || | |||||||| || ||||| ||| |||||||||||||| |
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|
| T |
1831803 |
attcacttcagatggtgtagatgcaggattgaagcccatcatgttgaatctc |
1831752 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 308 - 420
Target Start/End: Original strand, 23428366 - 23428478
Alignment:
| Q |
308 |
agttcccttgatgtatctcataacccttttagcttcaagcatatgagagattataggtacacacataaacctactgattatatcaaagacataaactata |
407 |
Q |
| |
|
||||||||||||| ||||||| | |||||||| |||||| |||||| || ||||| ||| ||| ||||| ||||||||| ||| |||| |||||| |
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|
| T |
23428366 |
agttcccttgatgcatctcatcattgttttagctgcaagcaagtgagagcttctaggttcactcatgaacctgctgattataccaacatcatagactata |
23428465 |
T |
|
| Q |
408 |
tatgacctgctat |
420 |
Q |
| |
|
|||| |||||||| |
|
|
| T |
23428466 |
tatggcctgctat |
23428478 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 48 - 121
Target Start/End: Original strand, 23428087 - 23428160
Alignment:
| Q |
48 |
gcttgcaaacttctatcttcagttccttcaacccggaatccagcaatattgcttgacatgctgctaaacaacct |
121 |
Q |
| |
|
||||||||||||||||||||||||| | ||| | |||||| | |||||| ||||||||| ||||| |||||| |
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|
| T |
23428087 |
gcttgcaaacttctatcttcagttctcttaacacataatccaaccatattgtttgacatgcagctaagcaacct |
23428160 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 72; Significance: 2e-32; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 31 - 213
Target Start/End: Complemental strand, 6240426 - 6240250
Alignment:
| Q |
31 |
aatgaggaatgcaataggcttgcaaacttctatcttcagttccttcaacccggaatccagcaatattgcttgacatgctgctaaacaacctgttatatat |
130 |
Q |
| |
|
|||||| ||||||||||||||||| ||||||||||||| ||| |||||||| |||||| | ||||||| ||||||||||||||| ||| | |||| | |
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|
| T |
6240426 |
aatgagaaatgcaataggcttgcatacttctatcttcatttctttcaacccataatccaaccatattgcgtgacatgctgctaaataacttactataaaa |
6240327 |
T |
|
| Q |
131 |
tctgattcacatgttgagaaggctaccataagttgtttctttgtacaccatgatattggataattcataaacataaacaagta |
213 |
Q |
| |
|
|| |||||||| |||||| |||| | ||||||||||||||||||||||||||||| |||||||||| |||||||||| |
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|
| T |
6240326 |
tcagattcacaagttgag------accacaggttgtttctttgtacaccatgatattggagcattcataaacttaaacaagta |
6240250 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 31 - 81
Target Start/End: Complemental strand, 6211491 - 6211441
Alignment:
| Q |
31 |
aatgaggaatgcaataggcttgcaaacttctatcttcagttccttcaaccc |
81 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||| ||| |||||||| |
|
|
| T |
6211491 |
aatgagaaatgcaataggcttgcaaacttctatcttcatttctttcaaccc |
6211441 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 48; Significance: 4e-18; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 308 - 447
Target Start/End: Original strand, 15490258 - 15490397
Alignment:
| Q |
308 |
agttcccttgatgtatctcataacccttttagcttcaagcatatgagagattataggtacacacataaacctactgattatatcaaagacataaactata |
407 |
Q |
| |
|
|||||||||||| |||| |||||| |||||||||| ||| |||||||| || ||||| || ||||||||||||||||||| ||| |||||||||||| |
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|
| T |
15490258 |
agttcccttgatctatcacataactcttttagctttaagtatatgagattttctaggttcagtcataaacctactgattataacaacaacataaactata |
15490357 |
T |
|
| Q |
408 |
tatgacctgctattacacgtatatctcaatgatcctacaa |
447 |
Q |
| |
|
| | |||||||||| |||||||||||| ||||||| |
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|
| T |
15490358 |
tcaggttggctattacacagatatctcaatgaccctacaa |
15490397 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 63 - 187
Target Start/End: Original strand, 15489987 - 15490111
Alignment:
| Q |
63 |
tcttcagttccttcaacccggaatccagcaatattgcttgacatgctgctaaacaacctgttatatattctgattcacatgttgagaaggctaccataag |
162 |
Q |
| |
|
|||||| |||||| ||| | ||||||||| ||| ||||||||||| |||||| |||||| |||||| ||| ||| | | ||||||| ||||| || | |
|
|
| T |
15489987 |
tcttcaattcctttaacacagaatccagccatagtgcttgacatgatgctaagaaacctgatatataatctaatttataggttgagagggctatcacaga |
15490086 |
T |
|
| Q |
163 |
ttgtttctttgtacaccatgatatt |
187 |
Q |
| |
|
||||||| ||||||||||||||||| |
|
|
| T |
15490087 |
ttgtttccttgtacaccatgatatt |
15490111 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.00000000002; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 38 - 186
Target Start/End: Complemental strand, 30066986 - 30066838
Alignment:
| Q |
38 |
aatgcaataggcttgcaaacttctatcttcagttccttcaacccggaatccagcaatattgcttgacatgctgctaaacaacctgttatatattctgatt |
137 |
Q |
| |
|
||||||||||||||||| | ||| || ||||||||||| ||| | |||| ||| ||| ||||||||||||||||||||| ||| || || || |||| |
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|
| T |
30066986 |
aatgcaataggcttgcagatttcaatattcagttcctttaacacataatctagccatactgcttgacatgctgctaaacaccctacaatgtactcagatt |
30066887 |
T |
|
| Q |
138 |
cacatgttgagaaggctaccataagttgtttctttgtacaccatgatat |
186 |
Q |
| |
|
|||| ||||| | ||| | |||||| || ||||||||||||||||| |
|
|
| T |
30066886 |
cacaagttgaaagtactaatacaagttgcttttttgtacaccatgatat |
30066838 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 333 - 496
Target Start/End: Complemental strand, 30065549 - 30065386
Alignment:
| Q |
333 |
cttttagcttcaagcatatgagagattataggtacacacataaacctactgattatatcaaagacataaactatatatgacctgctattacacgtatatc |
432 |
Q |
| |
|
|||| |||| |||| | ||||||| || ||||| ||| ||| ||||| ||||||||| ||| |||||| ||||| || | | |||| ||| || ||| |
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|
| T |
30065549 |
ctttcagctacaagtagatgagagcttctaggttcactcatgaacctgctgattataccaacaacataagctatagttggctagttattgcacttacatc |
30065450 |
T |
|
| Q |
433 |
tcaatgatcctacaatttgtttgaacaatgtagggtcaactaactccttatcttcattctttac |
496 |
Q |
| |
|
|||| |||||||||||||||| ||| ||||||| ||||| ||||||| || ||||||||||| |
|
|
| T |
30065449 |
tcaaggatcctacaatttgttagaaaaatgtagaatcaaccaactcctcgtcatcattctttac |
30065386 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 93 - 202
Target Start/End: Original strand, 27568643 - 27568752
Alignment:
| Q |
93 |
atattgcttgacatgctgctaaacaacctgttatatattctgattcacatgttgagaaggctaccataagttgtttctttgtacaccatgatattggata |
192 |
Q |
| |
|
||||||| ||||||||||| | ||| |||| ||||| || |||||||| ||||| || ||||| || |||| ||||| | ||||||||| |||||| |
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| T |
27568643 |
atattgcctgacatgctgccatacaccctgcaatatactcagattcacaggttgacaatgctacaattggttgcttcttagcacaccatgaaattggagc |
27568742 |
T |
|
| Q |
193 |
attcataaac |
202 |
Q |
| |
|
|||||||||| |
|
|
| T |
27568743 |
attcataaac |
27568752 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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