View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9612_high_30 (Length: 242)
Name: NF9612_high_30
Description: NF9612
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9612_high_30 |
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Alignment Details
Target: chr7 (Bit Score: 208; Significance: 1e-114; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 19 - 230
Target Start/End: Original strand, 47039447 - 47039658
Alignment:
| Q |
19 |
aacgctgccagagacaacaagaagaaccgtattgtaccaaggcacattcagcttgcagtgaggaacgacgaggaactcagcaagcttttgggaactgtga |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47039447 |
aacgctgccagagacaacaagaagaaccgtattgtaccaaggcacattcagcttgcagtgaggaacgacgaggaactcagcaagcttttgggaactgtga |
47039546 |
T |
|
| Q |
119 |
ccattgctaatggtggtgttttgcccaatattcatcagactttgctccctaagaaggttggaaagggaaaaggagaaattggatctgcttctcaagaatt |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
47039547 |
ccattgctaatggtggtgttttgcccaatattcatcagactttgctccctaagaaggttggaaagggaaaaggagaaattggatctgcgtctcaagaatt |
47039646 |
T |
|
| Q |
219 |
ctagggtttctg |
230 |
Q |
| |
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|||||||||||| |
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| T |
47039647 |
ctagggtttctg |
47039658 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 159; E-Value: 9e-85
Query Start/End: Original strand, 31 - 229
Target Start/End: Original strand, 47033175 - 47033373
Alignment:
| Q |
31 |
gacaacaagaagaaccgtattgtaccaaggcacattcagcttgcagtgaggaacgacgaggaactcagcaagcttttgggaactgtgaccattgctaatg |
130 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| || || ||||| || ||||||||||||||||| |||||||||||||||||||||| |
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| T |
47033175 |
gacaacaagaagaaccgtattgtaccaaggcacattcagcttgctgttagaaacgatgaagaactcagcaagcttttaggaactgtgaccattgctaatg |
47033274 |
T |
|
| Q |
131 |
gtggtgttttgcccaatattcatcagactttgctccctaagaaggttggaaagggaaaaggagaaattggatctgcttctcaagaattctagggtttct |
229 |
Q |
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| T |
47033275 |
gtggtgttctgcccaatattcatcagactttgcttcctaagaaggttggaaagggcaaaggagaaattggatctgcttctcaagaattttagggtttct |
47033373 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 19 - 232
Target Start/End: Complemental strand, 44071945 - 44071732
Alignment:
| Q |
19 |
aacgctgccagagacaacaagaagaaccgtattgtaccaaggcacattcagcttgcagtgaggaacgacgaggaactcagcaagcttttgggaactgtga |
118 |
Q |
| |
|
||||||||||| |||||||||||||| || ||||| |||||||| ||||||||||| |||||||| ||||| ||||||||||||||||||||| |||| | |
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| T |
44071945 |
aacgctgccagggacaacaagaagaatcgaattgttccaaggcatattcagcttgctgtgaggaatgacgaagaactcagcaagcttttgggagctgtaa |
44071846 |
T |
|
| Q |
119 |
ccattgctaatggtggtgttttgcccaatattcatcagactttgctccctaagaaggttggaaagggaaaaggagaaattggatctgcttctcaagaatt |
218 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||| ||||| |||||||| |||||||| || ||||| ||||||||||||||||||||||| || |
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| T |
44071845 |
ccattgctaatggtggtgttttgcccaatattcatcagacattgcttcctaagaaagttggaaaagggaaaggggaaattggatctgcttctcaagagtt |
44071746 |
T |
|
| Q |
219 |
ctagggtttctgtg |
232 |
Q |
| |
|
||||||||||||| |
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| T |
44071745 |
ttagggtttctgtg |
44071732 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 64 - 232
Target Start/End: Complemental strand, 47035436 - 47035268
Alignment:
| Q |
64 |
attcagcttgcagtgaggaacgacgaggaactcagcaagcttttgggaactgtgaccattgctaatggtggtgttttgcccaatattcatcagactttgc |
163 |
Q |
| |
|
||||| ||||| || |||||||| || ||||| ||||||||||||||| |||| |||||||||||||||||||||||||| || |||||||||||||||| |
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| T |
47035436 |
attcaacttgctgttaggaacgatgaagaactaagcaagcttttgggagctgtaaccattgctaatggtggtgttttgcctaacattcatcagactttgc |
47035337 |
T |
|
| Q |
164 |
tccctaagaaggttggaaagggaaaaggagaaattggatctgcttctcaagaattctagggtttctgtg |
232 |
Q |
| |
|
| || |||||| ||| |||||||||| |||||||||||||||||||||||||| |||||||| |||| |
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|
| T |
47035336 |
tgccaaagaagtctgggaagggaaaagccgaaattggatctgcttctcaagaattttagggtttatgtg |
47035268 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 49 - 178
Target Start/End: Complemental strand, 37367644 - 37367515
Alignment:
| Q |
49 |
attgtaccaaggcacattcagcttgcagtgaggaacgacgaggaactcagcaagcttttgggaactgtgaccattgctaatggtggtgttttgcccaata |
148 |
Q |
| |
|
||||||||||||||| |||| || || ||||||||||| || ||| | ||||| | |||||| |||||| ||||||||||||||||||||||| || | |
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| T |
37367644 |
attgtaccaaggcaccttcaactcgctgtgaggaacgatgaagaattgagcaaattgttgggacatgtgactattgctaatggtggtgttttgcctaaca |
37367545 |
T |
|
| Q |
149 |
ttcatcagactttgctccctaagaaggttg |
178 |
Q |
| |
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|||| ||||||||| | || |||||||||| |
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| T |
37367544 |
ttcaccagactttgttgccaaagaaggttg |
37367515 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 22 - 152
Target Start/End: Original strand, 34615562 - 34615692
Alignment:
| Q |
22 |
gctgccagagacaacaagaagaaccgtattgtaccaaggcacattcagcttgcagtgaggaacgacgaggaactcagcaagcttttgggaactgtgacca |
121 |
Q |
| |
|
||||| |||||||||||||||| | ||||| ||||| |||||||| | || ||||||||||| || ||| | ||||||||| | || ||| |||| |
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| T |
34615562 |
gctgcaagagacaacaagaagacaagaattgtgccaagacacattcaattggctgtgaggaacgatgaagaattgagcaagcttcttggtgatgttacca |
34615661 |
T |
|
| Q |
122 |
ttgctaatggtggtgttttgcccaatattca |
152 |
Q |
| |
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||||||||||||||||| ||||||||||||| |
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| T |
34615662 |
ttgctaatggtggtgttatgcccaatattca |
34615692 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 22 - 152
Target Start/End: Original strand, 34622744 - 34622874
Alignment:
| Q |
22 |
gctgccagagacaacaagaagaaccgtattgtaccaaggcacattcagcttgcagtgaggaacgacgaggaactcagcaagcttttgggaactgtgacca |
121 |
Q |
| |
|
||||| |||||||||||||||| | ||||| ||||| |||||||| | || ||||||||||| || ||| | ||||||||| | || ||| || | |
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|
| T |
34622744 |
gctgcaagagacaacaagaagacaagaattgtgccaagacacattcaattggctgtgaggaacgatgaagaattgagcaagcttcttggtgatgttacta |
34622843 |
T |
|
| Q |
122 |
ttgctaatggtggtgttttgcccaatattca |
152 |
Q |
| |
|
||||||||||||||||| |||| |||||||| |
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| T |
34622844 |
ttgctaatggtggtgttatgccaaatattca |
34622874 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 168 - 216
Target Start/End: Complemental strand, 5338665 - 5338617
Alignment:
| Q |
168 |
taagaaggttggaaagggaaaaggagaaattggatctgcttctcaagaa |
216 |
Q |
| |
|
|||||| |||||||| |||||| | |||||||||| ||||||||||||| |
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|
| T |
5338665 |
taagaacgttggaaaaggaaaaagcgaaattggatatgcttctcaagaa |
5338617 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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