View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9612_low_12 (Length: 503)
Name: NF9612_low_12
Description: NF9612
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9612_low_12 |
 | |
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Alignment Details
Target: chr2 (Bit Score: 447; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 447; E-Value: 0
Query Start/End: Original strand, 12 - 486
Target Start/End: Complemental strand, 39929321 - 39928847
Alignment:
| Q |
12 |
attatacttcaagctttagtcatggatcgttctttaggattccattttgaaatcccagctggttctatttctgttatagtcttaatatcagcacccattt |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39929321 |
attatacttcaagctttagtcatggatcgttctttaggataccattttgaaatcccagctggttctatttctgttatagtcttaatatcagcacccattt |
39929222 |
T |
|
| Q |
112 |
tcctcacttttcttgacagggtgctattgccaagttggcataaggttactggaaaatctcctaagctgctccaacaaataggagtaggacatgtgttcaa |
211 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
39929221 |
tcctcacttttcttgacagggtgctattgccaagttggcataaggttaccagaaaatctcctaagctgctccatcaaataggagtaggacatgtgttcaa |
39929122 |
T |
|
| Q |
212 |
tgttcttggcatggtggtctctgctcttgttgaatcgaagagactcaaattagcgcatgaacatgtttcaatgtctgtattatggttgtttccacaatta |
311 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39929121 |
tgttcttggcatggtggtctctgctcttgttgaatcgaagagactcaaattagcgcatgaacatgtttcaatgtctgtattatggttgtttccacaatta |
39929022 |
T |
|
| Q |
312 |
gtgttggttggtatcggagaagcgtttcattttcctggacaagttacattctattatcaacaatttccacaatcactaaagagcacatcaactgcaacgg |
411 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
39929021 |
gtgttggttggtatcggagaagcgtttcattttcctggacaagttacattctattatcaacaatttccacaatcgctaaagagcacatcaactgcaacgg |
39928922 |
T |
|
| Q |
412 |
tttcaatgcttatagggattgctttttacatgagcaatgctttaattgatcaagttcgtaggagtactgattggt |
486 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
39928921 |
tttcaatgcttataggggttgctttttacatgagcaatgcattaattgatcaagttcgtaggagtactgattggt |
39928847 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 16 - 486
Target Start/End: Complemental strand, 39934969 - 39934494
Alignment:
| Q |
16 |
tacttcaagctttagtcatggatcgttctttaggattccattttgaaatcccagctggttctatttctgttatagtcttaatatcagcacccattttcct |
115 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||| ||||||| ||||||||||| ||| | |||||||||| ||||||||||||||||||||||| || |
|
|
| T |
39934969 |
tacttcaagctttagtcatggatcggtctttaggaccccattttaaaatcccagctagttttgtttctgttattgtcttaatatcagcacccatttttct |
39934870 |
T |
|
| Q |
116 |
cacttttcttgacagggtgctattgccaagttggcataaggttactggaaaatctcctaagctgctccaacaaataggagtaggacatgtgttcaatgtt |
215 |
Q |
| |
|
||||||||||||||||||||| |||||| ||||||||||| |||| || ||||| | || || |||||| | |||||||| |||||||||||| | |||| |
|
|
| T |
39934869 |
cacttttcttgacagggtgctcttgccatgttggcataagattaccggcaaatcacttatgccgctccagcgaataggagcaggacatgtgttgactgtt |
39934770 |
T |
|
| Q |
216 |
cttggcatggtggtctctgctcttgttgaatcgaagagactcaaattagcgcatgaacat-----gtttcaatgtctgtattatggttgtttccacaatt |
310 |
Q |
| |
|
||||||||||| |||||||||||||||||||| ||||||||||||||||| |||| ||| ||||| ||||| || |||||||| ||||||||||| |
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|
| T |
39934769 |
cttggcatggttgtctctgctcttgttgaatcaaagagactcaaattagcacatgtgcatataatgtttccatgtccgtgttatggttttttccacaatt |
39934670 |
T |
|
| Q |
311 |
agtgttggttggtatcggagaagcgtttcattttcctggacaagttacattctattatcaacaatttccacaatcactaaagagcacatcaactgcaacg |
410 |
Q |
| |
|
||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| | |
|
|
| T |
39934669 |
agtgttggttggtattggagaagcttttcattttcctggacaagttacattctattatcaacaatttccacaatcacttaagagcacatcaactgcaatg |
39934570 |
T |
|
| Q |
411 |
gtttcaatgcttatagggattgctttttacatgagcaatgctttaattgatcaagttcgtaggagtactgattggt |
486 |
Q |
| |
|
|||||||||||||||| |||||||||||| |||||| |||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
39934569 |
atttcaatgcttataggaattgctttttacttgagcactgctttaattgaccaagttcgtaggagtactgattggt |
39934494 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 16 - 486
Target Start/End: Original strand, 39704058 - 39704528
Alignment:
| Q |
16 |
tacttcaagctttagtcatggatcgttctttaggattccattttgaaatcccagctggttctatttctgttatagtcttaatatcagcacccattttcct |
115 |
Q |
| |
|
||||||||||||||| ||||||||| || |||||| |||||| |||| |||||||||||| |||||||||||||| |||||||| || |||||||||| |
|
|
| T |
39704058 |
tacttcaagctttagccatggatcgctcattaggaccccatttcaaaattccagctggttctgtttctgttatagtcataatatcaacatccattttcct |
39704157 |
T |
|
| Q |
116 |
cacttttcttgacagggtgctattgccaagttggcataaggttactggaaaatctcctaagctgctccaacaaataggagtaggacatgtgttcaatgtt |
215 |
Q |
| |
|
||| ||||||||||| |||||||||||| ||||||||||| ||||||||||| | |||| || || |||| ||||||||||||||||||||| | |||| |
|
|
| T |
39704158 |
cacctttcttgacagagtgctattgccatgttggcataagattactggaaaaacgcctatgccacttcaacgaataggagtaggacatgtgttgactgtt |
39704257 |
T |
|
| Q |
216 |
cttggcatggtggtctctgctcttgttgaatcgaagagactcaaattagcgcatgaacatgtttcaatgtctgtattatggttgtttccacaattagtgt |
315 |
Q |
| |
|
||||||||||| |||||||||||||||||||| ||||| |||||||| | |||| ||||| ||||||||| ||||||||||||||||||||||||| |
|
|
| T |
39704258 |
cttggcatggttgtctctgctcttgttgaatcaaagaggctcaaattggtacatgtgcatgtggaaatgtctgtgttatggttgtttccacaattagtgt |
39704357 |
T |
|
| Q |
316 |
tggttggtatcggagaagcgtttcattttcctggacaagttacattctattatcaacaatttccacaatcactaaagagcacatcaactgcaacggtttc |
415 |
Q |
| |
|
|||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||| | |||| |
|
|
| T |
39704358 |
tggttggtattggagaagcttttcattttcctggacaagttacattctattatcaacaatttccacaatcacttaagatcacatcaactgcaatgatttc |
39704457 |
T |
|
| Q |
416 |
aatgcttatagggattgctttttacatgagcaatgctttaattgatcaagttcgtaggagtactgattggt |
486 |
Q |
| |
|
|||||||||||| ||||||||||| |||||| |||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
39704458 |
aatgcttataggtattgctttttatttgagcactgctttaattgaccaagttcgtaggagtactgattggt |
39704528 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 16 - 486
Target Start/End: Original strand, 39695146 - 39695619
Alignment:
| Q |
16 |
tacttcaagctttagtcatggatcgttctttaggattccattttgaaatcccagctggttctatttctgttatagtcttaatatcagcacccattttcct |
115 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||| ||||||| ||||||||||| ||||| |||||||||||||||| |||||||||||||||||||| |
|
|
| T |
39695146 |
tacttcaagctttagtcatggatcgttcattaggaccccattttaaaatcccagctagttctgtttctgttatagtcttgatatcagcacccattttcct |
39695245 |
T |
|
| Q |
116 |
cacttttcttgacagggtgctattgccaagttggcataaggtta-ctggaaaatctcctaagctgctccaacaaataggagtaggacatgtgttcaatgt |
214 |
Q |
| |
|
||| ||||||||||| |||||||| ||| ||||||||||||||| | ||||||| |||| || |||||||| |||||||| |||||||||||| | ||| |
|
|
| T |
39695246 |
cacatttcttgacagagtgctattaccaggttggcataaggttaccaggaaaat-gcctatgccgctccaacgaataggagcaggacatgtgttgactgt |
39695344 |
T |
|
| Q |
215 |
tcttggcatggtggtctctgctcttgttgaatcgaagagactcaaattagcgcatg---aacatgtttcaatgtctgtattatggttgtttccacaatta |
311 |
Q |
| |
|
|||||||||||| |||||||||||||||||||| |||||||||||||||| |||| | ||||||| |||||||| ||||||||||||||||| ||| |
|
|
| T |
39695345 |
tcttggcatggttgtctctgctcttgttgaatcaaagagactcaaattagtacatgtgcataatgtttccatgtctgtgttatggttgtttccacagtta |
39695444 |
T |
|
| Q |
312 |
gtgttggttggtatcggagaagcgtttcattttcctggacaagttacattctattatcaacaatttccacaatcactaaagagcacatcaactgcaacgg |
411 |
Q |
| |
|
|||||||||||||| |||||||| ||||||||||||||||||||||||||||| || |||||||||||||||||||| |||| ||||||||| |||| | |
|
|
| T |
39695445 |
gtgttggttggtattggagaagcttttcattttcctggacaagttacattctactaccaacaatttccacaatcacttaagaacacatcaacagcaatga |
39695544 |
T |
|
| Q |
412 |
tttcaatgcttatagggattgctttttacatgagcaatgctttaattgatcaagttcgtaggagtactgattggt |
486 |
Q |
| |
|
|||||||||||||||| ||||||||||| |||||| |||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
39695545 |
tttcaatgcttataggaattgctttttatttgagcactgctttaattgaccaagttcgtaggagtactgattggt |
39695619 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 150; Significance: 4e-79; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 150; E-Value: 4e-79
Query Start/End: Original strand, 16 - 419
Target Start/End: Complemental strand, 38061998 - 38061591
Alignment:
| Q |
16 |
tacttcaagctttagtcatggatcgttctttaggattccattttgaaatcccagctggttctatttctgttat---agtcttaatatcagcacccatttt |
112 |
Q |
| |
|
||||||||| |||| |||||||||||||| |||||| |||||| ||||||||||||||||| |||||||||| ||| ||||||||| || | ||||| |
|
|
| T |
38061998 |
tacttcaagatttaatcatggatcgttctgtaggatctcattttaaaatcccagctggttctgtttctgttattatagtgttaatatcaacatctatttt |
38061899 |
T |
|
| Q |
113 |
cctcacttttcttgacagggtgctattgccaagttggcataaggttactggaaaatct-cctaagctgctccaacaaataggagtaggacatgtgttcaa |
211 |
Q |
| |
|
|||||| ||||||||||| ||| |||||||| ||||| ||| | | || | |||| |||| || |||||||| |||||||||||| ||||||| | |
|
|
| T |
38061898 |
cctcacctttcttgacagagtgttattgccaggttggaatacgataaccgaaaaaaaagcctatgccgctccaacgaataggagtaggctatgtgttgac |
38061799 |
T |
|
| Q |
212 |
tgttcttggcatggtggtctctgctcttgttgaatcgaagagactcaaattagcgcatgaacatgtttcaatgtctgtattatggttgtttccacaatta |
311 |
Q |
| |
|
|||| || ||||| ||||| ||||||||||| | || |||||||||||||| |||| ||||| ||||||||| ||||| ||||||||||||||| |
|
|
| T |
38061798 |
cattctgggtatggttgtctccgctcttgttgagacaaaaagactcaaattagcacatgttcatgtggaaatgtctgtgttatgtttgtttccacaatta |
38061699 |
T |
|
| Q |
312 |
gtgttggttggtatcggagaagcgtttcattttcctggacaagttacattctattatcaacaatttccacaatcactaaagagcacatcaactgcaacgg |
411 |
Q |
| |
|
|| |||| |||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||| ||| |
|
|
| T |
38061698 |
atgctggtgagtattggagaagcttttcattttcctggacaagttacattctattatcaacaatttccacagtcactgaagagcacatcaactgcagcgg |
38061599 |
T |
|
| Q |
412 |
tttcaatg |
419 |
Q |
| |
|
|| ||||| |
|
|
| T |
38061598 |
ttacaatg |
38061591 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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