View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9612_low_17 (Length: 487)
Name: NF9612_low_17
Description: NF9612
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9612_low_17 |
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Alignment Details
Target: chr8 (Bit Score: 193; Significance: 1e-105; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 19 - 215
Target Start/End: Original strand, 10102347 - 10102543
Alignment:
| Q |
19 |
tttgcattgttccattttagtctagtatttacatgacattcatttctcttttgacatgtaggtttatgattttgtgaaattgaaaaatatttactatgct |
118 |
Q |
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| T |
10102347 |
tttgcattgttcctttttagtctagtatttacatgacattcatttctcttttgacatgtaggtttatgattttgtgaaattgaaaaatatttactatgct |
10102446 |
T |
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| Q |
119 |
ggaagccatggaatggacatatcaacttcactggggtcttccaagtatcatgataagaatcatcaaacaaagggtgttgatgaaaaggtttacaagc |
215 |
Q |
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| T |
10102447 |
ggaagccatggaatggacatatcaacttcactggggtcttccaagtatcatgataagaatcatcaaacaaagggtgttgatgaaaaggtttacaagc |
10102543 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 135; E-Value: 4e-70
Query Start/End: Original strand, 340 - 482
Target Start/End: Original strand, 10102969 - 10103111
Alignment:
| Q |
340 |
ttaacgtctcataatgtattttagggtaatgaagttgtactttatcatccagcagaagaatttttaccaactatccaagaggtaatattattcattaatt |
439 |
Q |
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| T |
10102969 |
ttaacgtctcataatgtattttagggtaatgaagttgtactttatcatccagcagaagaatttttaccaacaatccaagaggtaatattattcattaatt |
10103068 |
T |
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| Q |
440 |
tgttcttaaaatgaacaaacttctttatgtaccctttgcttct |
482 |
Q |
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| T |
10103069 |
tgttcttaaaatgaacaaacttctttatgtaccctttggttct |
10103111 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 271 - 336
Target Start/End: Original strand, 10102598 - 10102663
Alignment:
| Q |
271 |
atgaaattcacatttctcttattatcagaacaatcttgtttgagacatacataacaataaggataa |
336 |
Q |
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| T |
10102598 |
atgaaattcacatttctcttattatcataacaatcttgtttgagacatacataacaataagaataa |
10102663 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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