View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9612_low_18 (Length: 474)
Name: NF9612_low_18
Description: NF9612
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9612_low_18 |
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Alignment Details
Target: chr4 (Bit Score: 444; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 444; E-Value: 0
Query Start/End: Original strand, 19 - 466
Target Start/End: Original strand, 33443389 - 33443836
Alignment:
| Q |
19 |
taaaattcaggagaacaataaagccatagaagctcaggacatgtactccatggatgattttgttgagatggagaaaagggctatagtttctgttaataca |
118 |
Q |
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| T |
33443389 |
taaaattcaggagaacaataaagccatagaagctcaggacatgtactccatggatgattttgttgagatggagaaaagggctatagtttctgttaataca |
33443488 |
T |
|
| Q |
119 |
ccgaaagaaggatacctgtccgatgtaagtgggagggagctagtgccagttgaacaagattttgacctcggtgagacaaataaggagatccaattcaaac |
218 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33443489 |
ccgaaagaaggatacttgtccgatgtaagtgggagggagctagtgccagttgaacaagattttgacctcggtgagacaaataaggagatccaattcaaac |
33443588 |
T |
|
| Q |
219 |
atacaacaaatcaaaaccaatttgattggcttcagattgttttgaatgccatgttgaaggaaaaacgcatatcgaaacgaagtctcgatgaactatttga |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33443589 |
atacaacaaatcaaaaccaatttgattggcttcagattgttttgaatgccatgttgaaggaaaaacgcatatcgaaacgaagtctcgatgaactatttga |
33443688 |
T |
|
| Q |
319 |
tgacataaaaatcgcattcgggtgtataaatcgctcaaatgctccttgcaaatctgagataactcaaaagtcagtggatcatggagaatctgattctttt |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33443689 |
tgacataaaaatcgcattcgggtgtataaatcgctcaaatgctccttgcaaatctgagataactcaaaagtcagtggatcatggagaatctgattctttt |
33443788 |
T |
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| Q |
419 |
catgttaaaagtttcagtggttttaccgaagcagtccatagaattatc |
466 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33443789 |
catgttaaaagtttcagtggttttaccgaagcagtccatagaattatc |
33443836 |
T |
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