View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9612_low_21 (Length: 454)
Name: NF9612_low_21
Description: NF9612
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9612_low_21 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 370; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 45 - 454
Target Start/End: Complemental strand, 170801 - 170392
Alignment:
| Q |
45 |
gatcaaaattaaagaacagaataacaatttagtgctttgattggtaacatatcaagcattgaaagaggtattgtccgagcaaaaaatatgatccgtccag |
144 |
Q |
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| T |
170801 |
gatcaaaattaaagaacaaaataacaatttagtgctttggttggtaacatatcaagcattgaaagaggtattgtccgaacaaaaaatatgacccgtccag |
170702 |
T |
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| Q |
145 |
ttaagcaaatgtggtccaaaccgatgattttgacagtgaaggagatattatttgtgtttcacctgacaagtgtgcttatgtgtggattcttgactttggt |
244 |
Q |
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| T |
170701 |
ttaagcaaatgtggtccaaaccgatgattttgacagtgaaggagatattatttgtgtttcacctggcaagtgtgcttatgtgtggattcttgactttggt |
170602 |
T |
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| Q |
245 |
tgttcttaccacatgacgctgcaatggaagtggttcactacattcaagtgaggtatttcaaaattgaaaaagaacttgatttccgtaagtagtctacccg |
344 |
Q |
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| T |
170601 |
tgttcttaccacatgacgccgcactggaagtggttcactacattcaagtgaggtatttcaaaattgaaaaagaacttgatttccgtaagtagtctacacg |
170502 |
T |
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| Q |
345 |
aaaacgactacctcaaggatatgagtgctagaaaattatgactctctcataaaagctacattaaaaaggtgttagagaaagttgatatgagcaattcaaa |
444 |
Q |
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| T |
170501 |
aaaacgactatctcaaggatatgagtgctagaaaattatgactctctcataaaagctacattaaaaaggtgctagagaaagttgatatgagcaattcaaa |
170402 |
T |
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| Q |
445 |
ggttgtgaat |
454 |
Q |
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| T |
170401 |
ggttgtgaat |
170392 |
T |
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