View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9612_low_23 (Length: 445)
Name: NF9612_low_23
Description: NF9612
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9612_low_23 |
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Alignment Details
Target: chr5 (Bit Score: 312; Significance: 1e-176; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 19 - 435
Target Start/End: Original strand, 12506987 - 12507392
Alignment:
| Q |
19 |
actttataggacaatgagagtcagaaggaatagagtaatgttgtgctcgtatatatgttaaggaaacacaacataaagtgagacattaaatctgatattg |
118 |
Q |
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| T |
12506987 |
actttataggacaatgagagtcagaaggaatagagtaatgttgtgctcgtata-----------aacacaacataaagtgagacattaaatctgatatcg |
12507075 |
T |
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| Q |
119 |
ataggatcgtaagaannnnnnnnaaccatcacattaaagattgtgaggaaaaatcttgtaagttgcctattgattaaggcatatgggtattt-atatagt |
217 |
Q |
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| T |
12507076 |
ataggatcgtaagaattttttttaaccatcacattaaagattgtgaggaaaaatcttgtaagttgcctattgattaaggcatatgtgtattttatatagt |
12507175 |
T |
|
| Q |
218 |
ataggtcgattatttttgaaagagcagaaaatcgtccctatcaagagtccacaactgcattaattagcatcaatttattggttacctttcaactattaat |
317 |
Q |
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| T |
12507176 |
ataggtcgattatttttgaaagagcacaaaatcgtccctatcaagagtccacaactgcattaattagcatcaatttattggttacctttcaactattaat |
12507275 |
T |
|
| Q |
318 |
taaagcatgccaactactaatgctgctagcccatattttcttctctcaaccattttgcattactgctatgttatcatcacctaatctccattatgatggt |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||| |||||||||||||| |
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| T |
12507276 |
taaagcatgccaactactaatgctgctagcccatattttcttctctcaaccattttgcattactgcgatattatcatcacctaatttccattatgatggt |
12507375 |
T |
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| Q |
418 |
attttatcctttgcttct |
435 |
Q |
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| T |
12507376 |
a-tttatcctttgtttct |
12507392 |
T |
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