View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9612_low_25 (Length: 419)
Name: NF9612_low_25
Description: NF9612
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9612_low_25 |
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Alignment Details
Target: chr2 (Bit Score: 377; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 1 - 393
Target Start/End: Complemental strand, 14742214 - 14741823
Alignment:
| Q |
1 |
aatgctccgactggatctaagaagccgctgcaacgtgctcataagcaaatgagtaaaaagcttgctctagaagccacttatgcaaacaagactagagaat |
100 |
Q |
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| T |
14742214 |
aatgctccgactggatctaagaagccgctgcaacgtgctcataagcaaatgagtaataagcttgctctagaagccacttatgcaaacaagactagagaat |
14742115 |
T |
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| Q |
101 |
taagtactgaggttggttcatcatttttattttgcaaagttgtgtttaaatttaatatttgtatggttatcataagaaatatatcagaagattaacttat |
200 |
Q |
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| T |
14742114 |
taagtactgaggttggttcatcatttttattttgcaaagttgtgttcaaatttaatatt-gtatggttatcataagaaatatatcagaagattaacttat |
14742016 |
T |
|
| Q |
201 |
gcatttaatttttgttgcttcagctgtccaatgttgagacggctttgagaagtctcaaaacaacaatgattgcacagtgcaggttcgtgaaagaatcacc |
300 |
Q |
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| T |
14742015 |
gcatttaatttttgttgcttcagctgtccaatgttgagacggctttgagaagtctcaaaacaacaatgattgcacagtgcaggttcgtgaaagaatcacc |
14741916 |
T |
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| Q |
301 |
cattattttcatttttgtagtctcatgttcaaattgccaaaatagtgctacatggtaggagtttaatagattttgatatcatcgacacgctta |
393 |
Q |
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| T |
14741915 |
cattattttcatttttgtagtctcatgttcaaattgccaaaatagtgctacatggtaggagtttaatagattttgatatcatcgacacgctta |
14741823 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 40 - 331
Target Start/End: Complemental strand, 14735200 - 14734910
Alignment:
| Q |
40 |
cataagcaaatgagtaaaaagcttgctctagaagccacttatgcaaacaagactagagaattaagtactgaggttggttcatcatttttattttgcaaag |
139 |
Q |
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| T |
14735200 |
cataagcaattgagtaaaaagcttgctctagaagccacttatgcaaacaagactagagaattaagtactgaggttggttcatcatttttgttttgcagag |
14735101 |
T |
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| Q |
140 |
ttgtgtttaaatttaatatttgtatggttatcataagaaatatatcagaagattaacttatgcatttaatttttgttgcttcagctgtccaatgttgaga |
239 |
Q |
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| T |
14735100 |
ttgtgtttaaattttatatt-gtatggttatcataagaaatatatcagaagattaacttatgcatttaatttttgttgctctacttgtccaagattgata |
14735002 |
T |
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| Q |
240 |
cggctttgagaagtctcaaaacaacaatgattgcacagtgcaggttcgtgaaagaatcacccattattttcatttttgtagtctcatgttca |
331 |
Q |
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| T |
14735001 |
cggctttgagaagtctcaaaacaacggtcattgcacagtacaggttcgtcaaagaatcacccattattttcatttttgtggtctcatgttca |
14734910 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 204 - 299
Target Start/End: Original strand, 14998525 - 14998620
Alignment:
| Q |
204 |
tttaatttttgttgcttcagctgtccaatgttgagacggctttgagaagtctcaaaacaacaatgattgcacagtgcaggttcgtgaaagaatcac |
299 |
Q |
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| T |
14998525 |
tttaacttttgttgttccagctgtctaagattgatatggctttgacaagtctcaaaacaaaagcaattgcaaagtgcaggtttgtgaaaaaatcac |
14998620 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 54; Significance: 7e-22; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 54 - 284
Target Start/End: Original strand, 29467226 - 29467453
Alignment:
| Q |
54 |
taaaaagcttgctctagaagccacttatgcaaacaagactagagaattaagtactgaggttggttcatcatttttattttgcaaagttgtgtttaaatt- |
152 |
Q |
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| T |
29467226 |
taaaaggcttgctcaagaagcaacttatgccaatatgactagggaattaagcactgaggttggttcattatttttttt---cagagctgtgtttaaaatc |
29467322 |
T |
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| Q |
153 |
taatatttgtatggttatcataagaaatatatcagaagattaacttatgcatttaatttttgttgcttcagctgtccaatgttgagacggctttgagaag |
252 |
Q |
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| T |
29467323 |
taatgat-gtatgttacttggaagaagtatttcagacggttaatttgtgcatttaacttttgttgttccagctgtctaaggttgatatggctttgagaag |
29467421 |
T |
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| Q |
253 |
tctcaaaacaacaatgattgcacagtgcaggt |
284 |
Q |
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| T |
29467422 |
tctcaaaacaacagcgatttcacagtgcaggt |
29467453 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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