View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9612_low_27 (Length: 416)
Name: NF9612_low_27
Description: NF9612
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9612_low_27 |
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Alignment Details
Target: chr5 (Bit Score: 385; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 14 - 406
Target Start/End: Complemental strand, 40442486 - 40442094
Alignment:
| Q |
14 |
aaaagaacaacagatactaacagaaaagcaacaccctcaagcatgggcacatggtatttatggaattagaagccaagctatcttctcatttgaaaaatta |
113 |
Q |
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| T |
40442486 |
aaaagaacaacagatactaacagaaaagcaacaccctcaagcatgggcacatggtatttatggaattagaagccaagctatcttctcatttgaaaaatta |
40442387 |
T |
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| Q |
114 |
gcaagtctatatagatattgttttcatggcttaggataagaggaacaatttcaatgaacatgtatggacatagaaaagtaatcagtgcctcaatctcaag |
213 |
Q |
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| T |
40442386 |
gcaagtctatatagatattgttttcatggcttaggataagaggaacaatttcaatgaacatgtatggacatagaaaagtaatcagtgcctcaatcacaag |
40442287 |
T |
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| Q |
214 |
gatgtccaaaatattgatcaagttggtaaaagattgtgtggttgtgttgtacctacagattccagggataagagttaagacaagtggattccacttttag |
313 |
Q |
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| T |
40442286 |
gatgtccaaaatattgatcaagttggtaaaagattgtgtggttgtgttgtgcctacagattccagggataagagttaagacaagtggattccacttttag |
40442187 |
T |
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| Q |
314 |
tttctatcatactccgtgtgcttgaaaatttgtatactcattaaaattttgtgaagaaaatttgtacgcaagtaaagatgcatcagtataatc |
406 |
Q |
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| T |
40442186 |
tttctatcatactccgtgtgcttgaaaatttgtatactcattaaaattttgtgaagaaaatttgtacgcaagtaaagatgcatcagtataatc |
40442094 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 359 - 406
Target Start/End: Complemental strand, 18812934 - 18812887
Alignment:
| Q |
359 |
attttgtgaagaaaatttgtacgcaagtaaagatgcatcagtataatc |
406 |
Q |
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| T |
18812934 |
attttgtgaagaaaatttgtatgtaagtaaaggtgcatcaatataatc |
18812887 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 41 - 101
Target Start/End: Original strand, 13063631 - 13063691
Alignment:
| Q |
41 |
gcaacaccctcaagcatgggcacatggtatttatggaattagaagccaagctatcttctca |
101 |
Q |
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| T |
13063631 |
gcaataccctcaagcattggcatttggtgtttcaggaattagaagccaagctatcatctca |
13063691 |
T |
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