View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9612_low_28 (Length: 403)
Name: NF9612_low_28
Description: NF9612
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9612_low_28 |
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| [»] scaffold0176 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 351; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 17 - 394
Target Start/End: Complemental strand, 38725649 - 38725269
Alignment:
| Q |
17 |
caaattatctcaaactgcgacagttctgaacatccactaaaacacccggcagatatctacgaataccatgtctatacaagttctccggacatgttttcta |
116 |
Q |
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|||||||||||||||||| || ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38725649 |
caaattatctcaaactgcaacggttctgaacatccactaaaacacccagcagatatctacgaataccatgtctatacaagttctccggacatgttttcta |
38725550 |
T |
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| Q |
117 |
ggaataccaggtttgataaggccccgagatccggtccaaaggcatt---tgttagtgagtatgctgtttggcgtgacgatgctggtcatggaagtcttta |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38725549 |
ggaataccaggtttgataaggccccgagatccggtccaaaggcattatttgttagtgagtatgctgtttggcgtgacgatgctggtcatggaagtcttta |
38725450 |
T |
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| Q |
214 |
tgcagctgtggccgaagctgcattccttattggaattgagaggaatagcgacctcgtcatcatggcttcatatgcaccccttttaatgaacattaacatg |
313 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38725449 |
tgcagctgtggctgaagctgcattccttattggaattgagaggaatagcgacctcgtcatcatggcttcatatgcaccccttttaatgaacattaacatg |
38725350 |
T |
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| Q |
314 |
aacttaacaaagaccaaagaagctaacgcgacgtggacgtggtggccagacgcaattgtttttaactcttatcagaattat |
394 |
Q |
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| T |
38725349 |
aacttaacaaagaccaaagaagctaacgcgacgtggacgtggtggccagacgcaattgtttttaactcttatcagaattat |
38725269 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0176 (Bit Score: 47; Significance: 1e-17; HSPs: 2)
Name: scaffold0176
Description:
Target: scaffold0176; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 156 - 246
Target Start/End: Original strand, 31543 - 31633
Alignment:
| Q |
156 |
aggcatttgttagtgagtatgctgtttggcgtgacgatgctggtcatggaagtctttatgcagctgtggccgaagctgcattccttattgg |
246 |
Q |
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||||||||||||||||||||||||||||| || ||||||||| |||||| |||||||||||||| || ||||||||||| || ||||| |
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| T |
31543 |
aggcatttgttagtgagtatgctgtttggaaggaagatgctggtgctggaagcctttatgcagctgttgctgaagctgcatttctcattgg |
31633 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0176; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 359 - 394
Target Start/End: Original strand, 31971 - 32006
Alignment:
| Q |
359 |
ccagacgcaattgtttttaactcttatcagaattat |
394 |
Q |
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| T |
31971 |
ccagatgcaattgtttttaactcttatcagaattat |
32006 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 47; Significance: 1e-17; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 156 - 246
Target Start/End: Original strand, 34164722 - 34164812
Alignment:
| Q |
156 |
aggcatttgttagtgagtatgctgtttggcgtgacgatgctggtcatggaagtctttatgcagctgtggccgaagctgcattccttattgg |
246 |
Q |
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||||||||||||||||||||||||||||| || ||||||||| |||||| |||||||||||||| || ||||||||||| || ||||| |
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| T |
34164722 |
aggcatttgttagtgagtatgctgtttggaaggaagatgctggtgctggaagcctttatgcagctgttgctgaagctgcatttctcattgg |
34164812 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 156 - 246
Target Start/End: Original strand, 34171219 - 34171309
Alignment:
| Q |
156 |
aggcatttgttagtgagtatgctgtttggcgtgacgatgctggtcatggaagtctttatgcagctgtggccgaagctgcattccttattgg |
246 |
Q |
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||||||||||||||||||||||||||||| || ||||||||| |||||| |||||||||||||| || ||||||||||| || ||||| |
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| T |
34171219 |
aggcatttgttagtgagtatgctgtttggaaggaagatgctggtgctggaagcctttatgcagctgttgctgaagctgcatttctcattgg |
34171309 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 156 - 246
Target Start/End: Original strand, 34214817 - 34214907
Alignment:
| Q |
156 |
aggcatttgttagtgagtatgctgtttggcgtgacgatgctggtcatggaagtctttatgcagctgtggccgaagctgcattccttattgg |
246 |
Q |
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| T |
34214817 |
aggcatttgttagtgagtatgctgtttggaaggaagatgctggtgctggaagcctttatgcagctgttgctgaagctgcatttctcattgg |
34214907 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 359 - 394
Target Start/End: Original strand, 34165150 - 34165185
Alignment:
| Q |
359 |
ccagacgcaattgtttttaactcttatcagaattat |
394 |
Q |
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||||| |||||||||||||||||||||||||||||| |
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| T |
34165150 |
ccagatgcaattgtttttaactcttatcagaattat |
34165185 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 359 - 394
Target Start/End: Original strand, 34171647 - 34171682
Alignment:
| Q |
359 |
ccagacgcaattgtttttaactcttatcagaattat |
394 |
Q |
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| T |
34171647 |
ccagatgcaattgtttttaactcttatcagaattat |
34171682 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 366 - 394
Target Start/End: Original strand, 34215251 - 34215279
Alignment:
| Q |
366 |
caattgtttttaactcttatcagaattat |
394 |
Q |
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| T |
34215251 |
caattgtttttaactcttatcagaattat |
34215279 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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