View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9612_low_32 (Length: 371)
Name: NF9612_low_32
Description: NF9612
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9612_low_32 |
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Alignment Details
Target: chr4 (Bit Score: 331; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 17 - 362
Target Start/End: Original strand, 54952736 - 54953079
Alignment:
| Q |
17 |
aatttcctgtacgagcaaatggctttgagaagacaaagcaaagggacaggtgtgtttatcccacagtcaacaacacaaccaagaaggaagcacagaaaag |
116 |
Q |
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| T |
54952736 |
aatttcctgtacgagcaaatggctttgagaagacaaagcaaagggacaggtgtgtttatcccacagtcaacaacacaaccaagaaggaagcacagaaaag |
54952835 |
T |
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| Q |
117 |
gaagatcttcttcatatgcaaaatgtcaaaaacaatctcaagatacaacaagaacggtttctcaaaattcttttaaacctataaataatggttgaggata |
216 |
Q |
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| T |
54952836 |
gaagatcttcttcatatgcaaaatgtcaaaaacaatctcaagatacaacaagaacggtttctcaaaattcttttaaacctataaataatggttgaggata |
54952935 |
T |
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| Q |
217 |
catacatgtgttgatccttcttcaaaacagcataattttctactcatcattagttactttgccaagtatgaataattctatagatggttaatttcaagga |
316 |
Q |
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| T |
54952936 |
catacatgtgttgatccttcttcaaaacagcatgattttcta--catcattagttactttgccaagtatgaataattctatagatggttaatttcaagga |
54953033 |
T |
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| Q |
317 |
tttatatatacataggccattatgtacatgggaatgccagtattat |
362 |
Q |
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| T |
54953034 |
tttatatatacataggccattatgtacatgggaatgccagtattat |
54953079 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 44 - 164
Target Start/End: Original strand, 7835792 - 7835909
Alignment:
| Q |
44 |
agaagacaaagcaaagggacaggtgtgtttatcccacagtcaacaacacaaccaagaaggaagcacagaaaaggaagatcttcttcatatgcaaaatgtc |
143 |
Q |
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| T |
7835792 |
agaagagaaagcaaaggaacaggagtgtttatcccaca---agcaacacaaccaagaaggaggtacaagaaaggaagatctaattcattctcaaaatatc |
7835888 |
T |
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| Q |
144 |
aaaaacaatctcaagatacaa |
164 |
Q |
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| T |
7835889 |
aaaagcagtctcaagacacaa |
7835909 |
T |
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