View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9612_low_4 (Length: 776)

Name: NF9612_low_4
Description: NF9612
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9612_low_4
NF9612_low_4
[»] chr4 (7 HSPs)
chr4 (122-720)||(17507443-17508046)
chr4 (18-123)||(17507311-17507416)
chr4 (405-653)||(1831752-1832003)
chr4 (18-108)||(23427932-23428022)
chr4 (58-114)||(1833943-1833999)
chr4 (407-519)||(23428366-23428478)
chr4 (147-220)||(23428087-23428160)
[»] chr7 (4 HSPs)
chr7 (130-312)||(6240250-6240426)
chr7 (130-180)||(6211441-6211491)
chr7 (31-116)||(6240468-6240553)
chr7 (35-116)||(6211532-6211613)
[»] chr2 (2 HSPs)
chr2 (407-546)||(15490258-15490397)
chr2 (162-286)||(15489987-15490111)
[»] chr5 (3 HSPs)
chr5 (137-285)||(30066838-30066986)
chr5 (432-595)||(30065386-30065549)
chr5 (53-114)||(30067036-30067097)
[»] chr6 (1 HSPs)
chr6 (192-301)||(27568643-27568752)


Alignment Details
Target: chr4 (Bit Score: 511; Significance: 0; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 511; E-Value: 0
Query Start/End: Original strand, 122 - 720
Target Start/End: Original strand, 17507443 - 17508046
Alignment:
Q  122 ttattgttaatgaggaatgcaataggcttgcaaacttctatcttcagttccttcaacccggaatccagcaatattgcttgacatgctgctaaacaacctg 221  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  17507443 ttattgttaatgaggaatgcaataggcttgcaaacttctatcttcagttccttcaacacggaatccagcaatattgcttgacatgctgctaaacaacctg 17507542  T
Q  222 ttatatattctgattcacatgttgagaaggctaccataagttgtttctttgtacaccatgatattggataattcataaacataaacaagtatcctaaagt 321  Q
     ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17507543 ctatatattctgattctcatgttgagaaggctaccataagttgtttctttgtacaccatgatattggataattcataaacataaacaagtatcctaaagt 17507642  T
Q  322 acttt--ctatcttgcttatttgagtaagcaattagattcatattttcttcattgacatttgtaggaaagagtatacaatagtataaagttcccttgatg 419  Q
    |||||  ||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  17507643 actttttctatcttgcttttctgagtaagcaattagattcatattttcttcattgacatttgtaggaaagagtataccatagtataaagttcccttgatg 17507742  T
Q  420 tatctcataacccttttagcttcaagcatatgagagattataggtacacacataaacctactgattatatcaaagacataaactatatatgacctgctat 519  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  17507743 tatctcataacccttttagcttcaagtatatgagagattataggtacactcataaacctactgattatatcaaagacataaactatatatggcctgctat 17507842  T
Q  520 tacacgtatatctcaatgatcctacaatttgtttgaacaatgtagggtcaactaactccttatcttcattctttacaagcttcatattcactttagctag 619  Q
    ||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||| |||||||| ||||||    
T  17507843 tacacgtatatctcaatgatcgtacaatttgtttgaacaatgtaggatcaactaactcctcatcttcattctttacaagcttcagattcacttcagctag 17507942  T
Q  620 tgtagattcaagattgcagctcat---gttgaatctcatcggaatatcaatatattatttcttctaatgcattgctaaacctttcaaagttttagtgaat 716  Q
    ||||||||||||||||||||||||   |||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  17507943 tgtagattcaagattgcagctcatcaggttgaatctcttcgaaatatcaatatattatttcttctaatgcattgctaaacctttcaaagtcttagtgaat 17508042  T
Q  717 tcca 720  Q
    ||||    
T  17508043 tcca 17508046  T

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Target: chr4; HSP #2
Raw Score: 98; E-Value: 7e-48
Query Start/End: Original strand, 18 - 123
Target Start/End: Original strand, 17507311 - 17507416
Alignment:
Q  18 gttcctctattgaacaatgtatgaccttaaaaatttctttgttcacttgttctctgataaagtgaaattttgccttaatgtgtttgcttctttcatgaaa 117  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  17507311 gttcctctattgaacaatgtatgaccttaaacatttctttgttcacttgttctctaataaagtgaaattttgccttaatgtgtttgcttctttcatgaaa 17507410  T
Q  118 acactt 123  Q
    ||||||    
T  17507411 acactt 17507416  T

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Target: chr4; HSP #3
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 405 - 653
Target Start/End: Complemental strand, 1832003 - 1831752
Alignment:
Q  405 aaagttcccttgatgtatctcataacccttttagcttcaagcatatgagagattataggtacacacataaacctactgattatatcaaagacataaacta 504  Q
    |||||||||||||||| ||||||||| ||||||| |  ||| | ||||||| || ||  | ||| | ||||||||| ||||||| |||    ||||| ||    
T  1832003 aaagttcccttgatgtttctcataactcttttagttgtaagaaaatgagagcttctaacttcactcttaaacctacagattataccaacatgataaatta 1831904  T
Q  505 tatatgacctgctattacacgtatatctcaatgatcctacaatttgtttgaacaatgtagggtcaactaactccttatcttcattctttacaagcttcat 604  Q
    ||||||  ||||||||||||  ||||||||  ||| ||| ||||||||||| ||||||||||||||||| ||| | ||||||||||||||||||||| |     
T  1831903 tatatggtctgctattacacagatatctcagagattctataatttgtttgatcaatgtagggtcaactagctcttcatcttcattctttacaagcttaag 1831804  T
Q  605 attcactttagctagtgtagattcaagattgcagc---tcatgttgaatctc 653  Q
    |||||||| || | |||||||| || ||||| |||   ||||||||||||||    
T  1831803 attcacttcagatggtgtagatgcaggattgaagcccatcatgttgaatctc 1831752  T

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Target: chr4; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 18 - 108
Target Start/End: Original strand, 23427932 - 23428022
Alignment:
Q  18 gttcctctattgaacaatgtatgaccttaaaaatttctttgttcacttgttctctgataaagtgaaattttgccttaatgtgtttgcttct 108  Q
    ||||||| || | |||||||||||||||||  |||| ||| ||||||||||||||||||||||||||| ||||||  |||||||| |||||    
T  23427932 gttcctcaatgggacaatgtatgaccttaagcatttatttattcacttgttctctgataaagtgaaatattgcctctatgtgtttacttct 23428022  T

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Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 58 - 114
Target Start/End: Complemental strand, 1833999 - 1833943
Alignment:
Q  58 gttcacttgttctctgataaagtgaaattttgccttaatgtgtttgcttctttcatg 114  Q
    |||||| |||||||| |||||||||||| |||||| |||||||||| ||||||||||    
T  1833999 gttcacatgttctcttataaagtgaaatcttgcctcaatgtgtttgtttctttcatg 1833943  T

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Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 407 - 519
Target Start/End: Original strand, 23428366 - 23428478
Alignment:
Q  407 agttcccttgatgtatctcataacccttttagcttcaagcatatgagagattataggtacacacataaacctactgattatatcaaagacataaactata 506  Q
    ||||||||||||| ||||||| |   |||||||| ||||||  |||||| || ||||| ||| ||| ||||| ||||||||| |||   |||| ||||||    
T  23428366 agttcccttgatgcatctcatcattgttttagctgcaagcaagtgagagcttctaggttcactcatgaacctgctgattataccaacatcatagactata 23428465  T
Q  507 tatgacctgctat 519  Q
    |||| ||||||||    
T  23428466 tatggcctgctat 23428478  T

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Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 147 - 220
Target Start/End: Original strand, 23428087 - 23428160
Alignment:
Q  147 gcttgcaaacttctatcttcagttccttcaacccggaatccagcaatattgcttgacatgctgctaaacaacct 220  Q
    |||||||||||||||||||||||||  | ||| |  |||||| | |||||| ||||||||| ||||| ||||||    
T  23428087 gcttgcaaacttctatcttcagttctcttaacacataatccaaccatattgtttgacatgcagctaagcaacct 23428160  T

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Target: chr7 (Bit Score: 72; Significance: 2e-32; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 130 - 312
Target Start/End: Complemental strand, 6240426 - 6240250
Alignment:
Q  130 aatgaggaatgcaataggcttgcaaacttctatcttcagttccttcaacccggaatccagcaatattgcttgacatgctgctaaacaacctgttatatat 229  Q
    |||||| ||||||||||||||||| ||||||||||||| ||| ||||||||  |||||| | ||||||| ||||||||||||||| ||| |  |||| |     
T  6240426 aatgagaaatgcaataggcttgcatacttctatcttcatttctttcaacccataatccaaccatattgcgtgacatgctgctaaataacttactataaaa 6240327  T
Q  230 tctgattcacatgttgagaaggctaccataagttgtttctttgtacaccatgatattggataattcataaacataaacaagta 312  Q
    || |||||||| ||||||      |||| | |||||||||||||||||||||||||||||  |||||||||| ||||||||||    
T  6240326 tcagattcacaagttgag------accacaggttgtttctttgtacaccatgatattggagcattcataaacttaaacaagta 6240250  T

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Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 130 - 180
Target Start/End: Complemental strand, 6211491 - 6211441
Alignment:
Q  130 aatgaggaatgcaataggcttgcaaacttctatcttcagttccttcaaccc 180  Q
    |||||| ||||||||||||||||||||||||||||||| ||| ||||||||    
T  6211491 aatgagaaatgcaataggcttgcaaacttctatcttcatttctttcaaccc 6211441  T

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Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 31 - 116
Target Start/End: Complemental strand, 6240553 - 6240468
Alignment:
Q  31 acaatgtatgaccttaaaaatttctttgttcacttgttctctgataaagtgaaattttgccttaatgtgtttgcttctttcatgaa 116  Q
    ||||||||||| |||||  |||||||  ||||||||||||||| | ||||||||| ||  || |||||||||||||||| ||||||    
T  6240553 acaatgtatgatcttaagcatttcttcattcacttgttctctggtgaagtgaaatcttctctcaatgtgtttgcttcttccatgaa 6240468  T

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Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 35 - 116
Target Start/End: Complemental strand, 6211613 - 6211532
Alignment:
Q  35 tgtatgaccttaaaaatttctttgttcacttgttctctgataaagtgaaattttgccttaatgtgtttgcttctttcatgaa 116  Q
    ||||||| |||||  |||||||  ||||||||||||||| | ||||||||| ||  || |||||||||||||||| ||||||    
T  6211613 tgtatgatcttaagcatttcttcattcacttgttctctggtgaagtgaaatcttctctcaatgtgtttgcttcttccatgaa 6211532  T

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Target: chr2 (Bit Score: 48; Significance: 5e-18; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 407 - 546
Target Start/End: Original strand, 15490258 - 15490397
Alignment:
Q  407 agttcccttgatgtatctcataacccttttagcttcaagcatatgagagattataggtacacacataaacctactgattatatcaaagacataaactata 506  Q
    |||||||||||| |||| |||||| |||||||||| ||| ||||||||  || ||||| ||  ||||||||||||||||||| |||  ||||||||||||    
T  15490258 agttcccttgatctatcacataactcttttagctttaagtatatgagattttctaggttcagtcataaacctactgattataacaacaacataaactata 15490357  T
Q  507 tatgacctgctattacacgtatatctcaatgatcctacaa 546  Q
    |  |    ||||||||||  |||||||||||| |||||||    
T  15490358 tcaggttggctattacacagatatctcaatgaccctacaa 15490397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 162 - 286
Target Start/End: Original strand, 15489987 - 15490111
Alignment:
Q  162 tcttcagttccttcaacccggaatccagcaatattgcttgacatgctgctaaacaacctgttatatattctgattcacatgttgagaaggctaccataag 261  Q
    |||||| |||||| ||| | ||||||||| ||| ||||||||||| ||||||  |||||| |||||| ||| ||| | | ||||||| ||||| || |      
T  15489987 tcttcaattcctttaacacagaatccagccatagtgcttgacatgatgctaagaaacctgatatataatctaatttataggttgagagggctatcacaga 15490086  T
Q  262 ttgtttctttgtacaccatgatatt 286  Q
    ||||||| |||||||||||||||||    
T  15490087 ttgtttccttgtacaccatgatatt 15490111  T

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Target: chr5 (Bit Score: 37; Significance: 0.00000000002; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 137 - 285
Target Start/End: Complemental strand, 30066986 - 30066838
Alignment:
Q  137 aatgcaataggcttgcaaacttctatcttcagttccttcaacccggaatccagcaatattgcttgacatgctgctaaacaacctgttatatattctgatt 236  Q
    ||||||||||||||||| | ||| || ||||||||||| ||| |  |||| ||| ||| ||||||||||||||||||||| |||   || || || ||||    
T  30066986 aatgcaataggcttgcagatttcaatattcagttcctttaacacataatctagccatactgcttgacatgctgctaaacaccctacaatgtactcagatt 30066887  T
Q  237 cacatgttgagaaggctaccataagttgtttctttgtacaccatgatat 285  Q
    |||| ||||| |   |||  | |||||| || |||||||||||||||||    
T  30066886 cacaagttgaaagtactaatacaagttgcttttttgtacaccatgatat 30066838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 432 - 595
Target Start/End: Complemental strand, 30065549 - 30065386
Alignment:
Q  432 cttttagcttcaagcatatgagagattataggtacacacataaacctactgattatatcaaagacataaactatatatgacctgctattacacgtatatc 531  Q
    |||| |||| |||| | ||||||| || ||||| ||| ||| ||||| ||||||||| |||  |||||| |||||  || |  | |||| ||| || |||    
T  30065549 ctttcagctacaagtagatgagagcttctaggttcactcatgaacctgctgattataccaacaacataagctatagttggctagttattgcacttacatc 30065450  T
Q  532 tcaatgatcctacaatttgtttgaacaatgtagggtcaactaactccttatcttcattctttac 595  Q
    |||| |||||||||||||||| ||| |||||||  ||||| |||||||  || |||||||||||    
T  30065449 tcaaggatcctacaatttgttagaaaaatgtagaatcaaccaactcctcgtcatcattctttac 30065386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 53 - 114
Target Start/End: Complemental strand, 30067097 - 30067036
Alignment:
Q  53 tctttgttcacttgttctctgataaagtgaaattttgccttaatgtgtttgcttctttcatg 114  Q
    |||||||||||||||||||||| ||| ||||| ||||| | ||| || ||||||||| ||||    
T  30067097 tctttgttcacttgttctctgagaaaatgaaactttgcttcaatatgcttgcttcttccatg 30067036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 192 - 301
Target Start/End: Original strand, 27568643 - 27568752
Alignment:
Q  192 atattgcttgacatgctgctaaacaacctgttatatattctgattcacatgttgagaaggctaccataagttgtttctttgtacaccatgatattggata 291  Q
    ||||||| ||||||||||| | ||| ||||  ||||| || |||||||| ||||| || ||||| ||  |||| ||||| | ||||||||| ||||||      
T  27568643 atattgcctgacatgctgccatacaccctgcaatatactcagattcacaggttgacaatgctacaattggttgcttcttagcacaccatgaaattggagc 27568742  T
Q  292 attcataaac 301  Q
    ||||||||||    
T  27568743 attcataaac 27568752  T

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