View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9612_low_40 (Length: 339)
Name: NF9612_low_40
Description: NF9612
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9612_low_40 |
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Alignment Details
Target: chr5 (Bit Score: 308; Significance: 1e-173; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 12 - 323
Target Start/End: Complemental strand, 42264615 - 42264304
Alignment:
| Q |
12 |
agagagcatatatagaacaaagagggaaggcgctatgttaataggtatcttgtgcacgcaactgcaaagactaacaatggatggcaaaactcttcctcaa |
111 |
Q |
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| T |
42264615 |
agagagcatatatagaacaaagagggaaggcgctatgttaataggtatcttgtgcacgcaactgcaaagactaacaatggatggcaaaactcttcctcaa |
42264516 |
T |
|
| Q |
112 |
gagaaaatcagcgcgatttttcaataggtgggtaaatagtttgcacaaaaccgatggacatgaaaactaccaacactctttaatctgggtaaaaacttaa |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42264515 |
gagaaaatcagcgcgatttttcaataggtgggtaaatagtttgcacaaaaccgatggacatgaaaactaccaacactctttaatctgggtaaaaacttaa |
42264416 |
T |
|
| Q |
212 |
caaagttgaagaaatatgaattgtttgttcaaaaaatttcaattttgaaattcaataacccgatgaaccaaaccgattcaataatttgttatttagaacc |
311 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42264415 |
caaagttgaagaaatatgaattgtttgttcaaaaaaattcaattttgaaattcaataacccgatgaaccaaaccgattcaataatttgttatttagaacc |
42264316 |
T |
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| Q |
312 |
aaaagtgcatgt |
323 |
Q |
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|||||||||||| |
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| T |
42264315 |
aaaagtgcatgt |
42264304 |
T |
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