View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9612_low_41 (Length: 327)
Name: NF9612_low_41
Description: NF9612
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9612_low_41 |
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Alignment Details
Target: chr4 (Bit Score: 262; Significance: 1e-146; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 45 - 310
Target Start/End: Original strand, 55869849 - 55870114
Alignment:
| Q |
45 |
gtaaattccaggaactgattttgattcatactgattacaatattatagcaggataaaaaataaatatacctgctcaacccaataatggtatgtatagctt |
144 |
Q |
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| T |
55869849 |
gtaaattccgggaactgattttgattcatactgattacaatattatagcaggataaaaaataaatatacctgctcaacccaataatggtatgtatagctt |
55869948 |
T |
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| Q |
145 |
atattggtcttcctccaagcttcaaggtcaagaatgttcatgccataagcccaagcacattcatttggatcaaagtttttagatattagagggtgggaga |
244 |
Q |
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| T |
55869949 |
atattggtcttcctccaagcttcaaggtcaagaatgttcatgccataagcccaagcacattcatttggatcaaagtttttagatattagagggtgggaga |
55870048 |
T |
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| Q |
245 |
agttcaaatagcttttcaacatctttgacatcacacgtttatctttccctttgcatgtttctactg |
310 |
Q |
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| T |
55870049 |
agttcaaatagcttttcaacatctttgacatcacacgtttatctttccctttgcatgtttctactg |
55870114 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 117 - 309
Target Start/End: Complemental strand, 31536557 - 31536375
Alignment:
| Q |
117 |
ctcaacccaataatggtatgtatagcttatattggtcttcctccaagcttcaaggtcaagaa-tgttcatgccataagcccaagcacattcatttggatc |
215 |
Q |
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| T |
31536557 |
ctcaaccccataatggtatgtatggcttatattggtcttcctccatgcctcaaggtaaaaaaatgttcatgct-----------cacattcatttggatc |
31536469 |
T |
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| Q |
216 |
aaagtttttagatattagagggtgggagaagttcaaatagcttttcaacatctttgacatcacacgtttatctttccctttgcatgtttctact |
309 |
Q |
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| T |
31536468 |
aaaacttttggatattagagggtgggagaagtacaaatagcttttcaacctctttgagatcacaagtttatcttcccctttgtatggttctact |
31536375 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 78; Significance: 3e-36; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 110 - 279
Target Start/End: Original strand, 34674578 - 34674747
Alignment:
| Q |
110 |
atacctgctcaacccaataatggtatgtatagcttatattggtcttcctccaagcttcaaggtcaagaatgttcatgccataagcccaagcacattcatt |
209 |
Q |
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| T |
34674578 |
atacctgcgcaacccaatgatgatatttattgcttatattggtcctcctccaagcttccaaatcaaaaatgttcatgccataggcccaagcacattcgtt |
34674677 |
T |
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| Q |
210 |
tggatcaaagtttttagatattagagggtgggagaagttcaaatagcttttcaacatctttgacatcaca |
279 |
Q |
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| T |
34674678 |
gggattgaaattttcagatattagagggtgagaaaagttcaaataacttttcaaccttttcgacatcaca |
34674747 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 178 - 222
Target Start/End: Complemental strand, 12862807 - 12862763
Alignment:
| Q |
178 |
atgttcatgccataagcccaagcacattcatttggatcaaagttt |
222 |
Q |
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| T |
12862807 |
atgttcatgccatatgcccaaccacaagcatttggatcaaagttt |
12862763 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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