View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9612_low_43 (Length: 311)
Name: NF9612_low_43
Description: NF9612
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9612_low_43 |
 | |
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Alignment Details
Target: chr4 (Bit Score: 276; Significance: 1e-154; HSPs: 17)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 5 - 292
Target Start/End: Complemental strand, 27508473 - 27508186
Alignment:
| Q |
5 |
taaacatgctgaagacatgttttcttcattatgacaatgctgatgtccagctggtaagtgactataaggccatagataacaatagatcaacagaaaccat |
104 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27508473 |
taaacatgctgaagacatgttttcttcattatgacaatgctgatgtccagctagtaagtgactataaggccatagataacaatagatcaacagaaaccat |
27508374 |
T |
|
| Q |
105 |
tctacatgtttgtggttctacttacaagtctatcaattatatgatgcttcttctcaagaattatgcattatctagctaccataacccttgaagtctctaa |
204 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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|
| T |
27508373 |
tctacatgtttgtggttctacttacaagtctatcaattatatgatgcttcttctcaagaattatgcattatctagctaccataacgcttgaagtctctaa |
27508274 |
T |
|
| Q |
205 |
gacaactccatgtgatctttcatacgcccttgtctgggcatgactcatatcttatggccctccttcattgattattacaatttccgac |
292 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27508273 |
gacaactccatgtgatctttcatatgcccttgtctgggcatgactcatatcttatggccctccttcattgattattacaatttccgac |
27508186 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 1 - 276
Target Start/End: Original strand, 27468908 - 27469194
Alignment:
| Q |
1 |
tttgtaaacatgctgaagacatgttttcttcattatgacaatgctgatgtccagctggtaagtgactataaggccatagataacaatagatcaacagaaa |
100 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||| ||||| ||||| ||||||||||||||||||||||||| ||||||||||||||||| ||| |
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|
| T |
27468908 |
tttgtaaacatgcttcagacatgttttcttcattatgataatgccgatgtgaagctggtaagtgactataaggccatggataacaatagatcaactcaaa |
27469007 |
T |
|
| Q |
101 |
ccattctacatgtttgtggttctacttacaagtctatcaattatatgatgcttcttctcaagaattatgcattatctagctaccataacccttgaagtct |
200 |
Q |
| |
|
||||||||||||| ||||||||||||| |||||||||| || ||||||||||||| |||||||||||||||||||||| |||| | | | ||||||| | |
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|
| T |
27469008 |
ccattctacatgtctgtggttctactttcaagtctatctatcatatgatgcttctactcaagaattatgcattatctatctactacaccatttgaagtat |
27469107 |
T |
|
| Q |
201 |
ct-----------aagacaactccatgtgatctttcatacgcccttgtctgggcatgactcatatcttatggccctccttcattgat |
276 |
Q |
| |
|
| ||||||| ||||||||||||||||| || ||||||||| |||||||||||||| ||||||||||||||||||| |
|
|
| T |
27469108 |
atccattcatttagagacaacaccatgtgatctttcatatgctcttgtctggccatgactcatatctcatggccctccttcattgat |
27469194 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 1 - 276
Target Start/End: Complemental strand, 27514462 - 27514176
Alignment:
| Q |
1 |
tttgtaaacatgctgaagacatgttttcttcattatgacaatgctgatgtccagctggtaagtgactataaggccatagataacaatagatcaacagaaa |
100 |
Q |
| |
|
|||||||||||||| ||||||||||||| |||||||| ||||||||||||||||| |||||||||||||| |||||||||||||||| | ||||| ||| |
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|
| T |
27514462 |
tttgtaaacatgctttagacatgttttctgcattatgataatgctgatgtccagctagtaagtgactataatgccatagataacaatataacaacataaa |
27514363 |
T |
|
| Q |
101 |
ccattctacatgtttgtggttctacttacaagtctatcaattatatgatgcttcttctcaagaattatgcattatctagctaccataacccttgaagt-- |
198 |
Q |
| |
|
|||||||| |||||||||| | ||||| ||||||||||||||||||||||||| | |||||||||||||||||||||| |||| | ||| |||||||| |
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|
| T |
27514362 |
ccattctatatgtttgtggctttactttcaagtctatcaattatatgatgcttatgctcaagaattatgcattatctatctactacaacacttgaagttt |
27514263 |
T |
|
| Q |
199 |
--------ctcta-agacaactccatgtgatctttcatacgcccttgtctgggcatgactcatatcttatggccctccttcattgat |
276 |
Q |
| |
|
|||| ||||||| ||||||||||||||||| || ||||||||| ||| |||| | || ||||||||||||||||||| |
|
|
| T |
27514262 |
atccattcatctagagacaacaccatgtgatctttcatatgctcttgtctggccatagctcaaacctcatggccctccttcattgat |
27514176 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 1 - 183
Target Start/End: Original strand, 27476138 - 27476320
Alignment:
| Q |
1 |
tttgtaaacatgctgaagacatgttttcttcattatgacaatgctgatgtccagctggtaagtgactataaggccatagataacaatagatcaacagaaa |
100 |
Q |
| |
|
||||||| |||||| |||||||||||||||||||||| ||||| ||||| |||||||| |||||| ||||| ||| |||||||||||||||||| ||| |
|
|
| T |
27476138 |
tttgtaagcatgcttcagacatgttttcttcattatgataatgccgatgtgaagctggtatgtgactctaaggacatggataacaatagatcaacataaa |
27476237 |
T |
|
| Q |
101 |
ccattctacatgtttgtggttctacttacaagtctatcaattatatgatgcttcttctcaagaattatgcattatctagctac |
183 |
Q |
| |
|
||||||||||||| ||||||| ||||| ||||||||||||||||||||||||||| |||||||||||||||||||||| |||| |
|
|
| T |
27476238 |
ccattctacatgtctgtggttgtactttcaagtctatcaattatatgatgcttctgctcaagaattatgcattatctatctac |
27476320 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 4 - 183
Target Start/End: Complemental strand, 27524090 - 27523910
Alignment:
| Q |
4 |
gtaaacatgctgaagacatgttttcttcattatgacaatgctgatgtccagctggtaagtgactataaggccatagataacaatagatcaacagaaacca |
103 |
Q |
| |
|
||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||| ||| | ||| || ||||||||| |||||||| |||||| |
|
|
| T |
27524090 |
gtaaacatgcttcagacatgttttcttcattatgataatgctgatgtccagctggtaagtgtctacatggctatggataacaattgatcaacataaacca |
27523991 |
T |
|
| Q |
104 |
ttctacatgtttgtgg-ttctacttacaagtctatcaattatatgatgcttcttctcaagaattatgcattatctagctac |
183 |
Q |
| |
|
|||||||||| ||||| || ||||| ||||||||||||||||||||||||| | | |||||||||||||||||||| |||| |
|
|
| T |
27523990 |
ttctacatgtctgtggtttgtactttcaagtctatcaattatatgatgcttttgcacaagaattatgcattatctatctac |
27523910 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 1 - 276
Target Start/End: Complemental strand, 27489680 - 27489394
Alignment:
| Q |
1 |
tttgtaaacatgctgaagacatgttttcttcattatgacaatgctgatgtccagctggtaagtgactataaggccatagataacaatagatcaacagaaa |
100 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||| |||| |||||||||||||| ||||| |||||||| || |||| || ||||| || | |
|
|
| T |
27489680 |
tttgtaaacatgctttagacatgttttcttcattatgaaaatgtcgatgtccagctggttagtgattataaggcaatgtataattatggatcatcatagg |
27489581 |
T |
|
| Q |
101 |
ccattctacatgtttgtggttctacttacaagtctatcaattatatgatgcttcttctcaagaattatgcattatctagctaccataacccttgaagtct |
200 |
Q |
| |
|
||||||||||||| ||||||| ||||| ||||||||||||||||||||||||||| | |||||||||||||||||||| |||| | | | ||||||| | |
|
|
| T |
27489580 |
ccattctacatgtctgtggttgtactttcaagtctatcaattatatgatgcttctgcacaagaattatgcattatctatctactacaccatttgaagtat |
27489481 |
T |
|
| Q |
201 |
ct-----------aagacaactccatgtgatctttcatacgcccttgtctgggcatgactcatatcttatggccctccttcattgat |
276 |
Q |
| |
|
| ||||||| ||||||||||||||||| || |||||||| ||||||||| ||||||||||||||||||| |||| |
|
|
| T |
27489480 |
atccattcatttcgagacaacaccatgtgatctttcatatgctcttgtctgaacatgactcaaatcttatggccctccttcactgat |
27489394 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 114
Target Start/End: Original strand, 27556969 - 27557082
Alignment:
| Q |
1 |
tttgtaaacatgctgaagacatgttttcttcattatgacaatgctgatgtccagctggtaagtgactataaggccatagataacaatagatcaacagaaa |
100 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||| | || |||| |||||||||||||||| ||||| || || |||||||||||||||||| ||| |
|
|
| T |
27556969 |
tttgtaaacatgctttagacatgttttcttcattatgatagtgttgatttccagctggtaagtgattataacgcaatggataacaatagatcaacataaa |
27557068 |
T |
|
| Q |
101 |
ccattctacatgtt |
114 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
27557069 |
ccattctacatgtt |
27557082 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 96
Target Start/End: Complemental strand, 27503494 - 27503399
Alignment:
| Q |
1 |
tttgtaaacatgctgaagacatgttttcttcattatgacaatgctgatgtccagctggtaagtgactataaggccatagataacaatagatcaaca |
96 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||| |||| ||||||||||||| |||||||||||||||| || |||||||||||||||||| |
|
|
| T |
27503494 |
tttgtaaacatgcttcagacatgttttcttcattatgataatgttgatgtccagctgataagtgactataaggcaatggataacaatagatcaaca |
27503399 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 1 - 117
Target Start/End: Original strand, 27497858 - 27497975
Alignment:
| Q |
1 |
tttgtaaacatgctgaagacatgttttcttcattatgacaatgctgatgtccagctggtaagtga-ctataaggccatagataacaatagatcaacagaa |
99 |
Q |
| |
|
|||||||||| ||| | ||||||||||||||||||||| |||| ||||||| ||||||||||||| |||||||| | |||||||||||||||||| || |
|
|
| T |
27497858 |
tttgtaaacaggcttaggacatgttttcttcattatgataatgttgatgtctagctggtaagtgagatataaggcagtggataacaatagatcaacataa |
27497957 |
T |
|
| Q |
100 |
accattctacatgtttgt |
117 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
27497958 |
accattctacatgtttgt |
27497975 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 196 - 291
Target Start/End: Complemental strand, 27503280 - 27503185
Alignment:
| Q |
196 |
agtctctaagacaactccatgtgatctttcatacgcccttgtctgggcatgactcatatcttatggccctccttcattgattattacaatttccga |
291 |
Q |
| |
|
|||||| |||||||| ||||||||||||||||| |||||||||||| ||||| |||| ||||||||||||| |||| |||| ||||||||| |||| |
|
|
| T |
27503280 |
agtctcgaagacaacaccatgtgatctttcatatgcccttgtctggccatgaatcatttcttatggccctcattcaatgatcattacaattgccga |
27503185 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 202 - 271
Target Start/End: Original strand, 27466482 - 27466551
Alignment:
| Q |
202 |
taagacaactccatgtgatctttcatacgcccttgtctgggcatgactcatatcttatggccctccttca |
271 |
Q |
| |
|
||||||||| ||||||||| ||||||| || |||||||| ||||||||| |||||||||||||| |||| |
|
|
| T |
27466482 |
taagacaacaccatgtgatgtttcatatgctcttgtctgaccatgactcaaatcttatggccctcattca |
27466551 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 203 - 276
Target Start/End: Complemental strand, 27526588 - 27526515
Alignment:
| Q |
203 |
aagacaactccatgtgatctttcatacgcccttgtctgggcatgactcatatcttatggccctccttcattgat |
276 |
Q |
| |
|
|||||||| |||||||||| |||||| || ||||||| ||||||||| ||||||||||||||||||| |||| |
|
|
| T |
27526588 |
aagacaacaccatgtgatcattcatatgctcttgtctaaccatgactcaaatcttatggccctccttcactgat |
27526515 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 203 - 281
Target Start/End: Original strand, 27473556 - 27473634
Alignment:
| Q |
203 |
aagacaactccatgtgatctttcatacgcccttgtctgggcatgactcatatcttatggccctccttcattgattatta |
281 |
Q |
| |
|
|||||||| ||||||||| ||||||| || |||||||| ||||||||| || ||||||||||| |||| |||| |||| |
|
|
| T |
27473556 |
aagacaacaccatgtgatgtttcatatgctcttgtctgaacatgactcaaatattatggccctcattcactgatcatta |
27473634 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 27506315 - 27506260
Alignment:
| Q |
1 |
tttgtaaacatgctgaagacatgttttcttcattatgacaatgctgatgtccagct |
56 |
Q |
| |
|
|||||||||||| | |||||||||||||||||||| | | ||||||||||||||| |
|
|
| T |
27506315 |
tttgtaaacatgtttcagacatgttttcttcattatcaaagtgctgatgtccagct |
27506260 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 204 - 275
Target Start/End: Complemental strand, 27523878 - 27523807
Alignment:
| Q |
204 |
agacaactccatgtgatctttcatacgcccttgtctgggcatgactcatatcttatggccctccttcattga |
275 |
Q |
| |
|
||||||| ||||||||||||||||| || ||||||||| ||||| | | ||| |||| ||||||||||||| |
|
|
| T |
27523878 |
agacaacaccatgtgatctttcatatgctcttgtctggccatgattaaattctcatggtcctccttcattga |
27523807 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 70 - 147
Target Start/End: Complemental strand, 27517243 - 27517168
Alignment:
| Q |
70 |
aaggccatagataacaatagatcaacagaaaccattctacatgtttgtggttctacttacaagtctatcaattatatg |
147 |
Q |
| |
|
||||| ||||||| ||||||||| || |||||| ||||||||||||||||| ||||| ||||| || ||||||||| |
|
|
| T |
27517243 |
aaggcaatagatagcaatagatc--cataaaccactctacatgtttgtggttatactttcaagttgattaattatatg |
27517168 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 204 - 276
Target Start/End: Original strand, 27476352 - 27476424
Alignment:
| Q |
204 |
agacaactccatgtgatctttcatacgcccttgtctgggcatgactcatatcttatggccctccttcattgat |
276 |
Q |
| |
|
||||||| ||||||||||||||||| || ||||||||| |||| || | ||| |||| ||||||| |||||| |
|
|
| T |
27476352 |
agacaacaccatgtgatctttcatatgctcttgtctggccatggctaaattctaatggtcctccttaattgat |
27476424 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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