View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9612_low_44 (Length: 309)

Name: NF9612_low_44
Description: NF9612
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9612_low_44
NF9612_low_44
[»] chr6 (29 HSPs)
chr6 (20-279)||(5102158-5102417)
chr6 (20-279)||(5137210-5137469)
chr6 (26-307)||(5426194-5426476)
chr6 (26-287)||(5350672-5350933)
chr6 (26-284)||(5447865-5448123)
chr6 (20-186)||(5128054-5128220)
chr6 (26-187)||(5157264-5157425)
chr6 (169-306)||(5157115-5157252)
chr6 (26-138)||(5096992-5097104)
chr6 (26-127)||(5066390-5066491)
chr6 (169-285)||(5371028-5371144)
chr6 (26-187)||(5370855-5371016)
chr6 (169-280)||(5127930-5128041)
chr6 (182-281)||(5397447-5397546)
chr6 (169-271)||(5097165-5097267)
chr6 (46-186)||(2938396-2938536)
chr6 (182-271)||(5354109-5354198)
chr6 (27-137)||(5383611-5383721)
chr6 (26-138)||(5073593-5073705)
chr6 (196-275)||(5181469-5181548)
chr6 (182-284)||(5434685-5434787)
chr6 (46-127)||(5689855-5689936)
chr6 (191-271)||(5066189-5066269)
chr6 (46-138)||(5177046-5177138)
chr6 (198-286)||(5243392-5243480)
chr6 (46-138)||(5278873-5278965)
chr6 (48-127)||(5397256-5397335)
chr6 (30-136)||(5181629-5181735)
chr6 (207-275)||(5283942-5284007)
[»] chr7 (1 HSPs)
chr7 (44-270)||(36213382-36213608)
[»] chr5 (1 HSPs)
chr5 (191-274)||(8878106-8878189)
[»] scaffold0294 (1 HSPs)
scaffold0294 (26-88)||(8635-8697)
[»] chr4 (1 HSPs)
chr4 (255-284)||(48847615-48847644)


Alignment Details
Target: chr6 (Bit Score: 180; Significance: 3e-97; HSPs: 29)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 20 - 279
Target Start/End: Complemental strand, 5102417 - 5102158
Alignment:
Q  20 ccacggactatcatcgatttcccagtaccttccaagtcttcgaagtctttgggtggagtgcagttcagagcttcaactttcttatgatgcagcaataatt 119  Q
    ||||| ||||||||||||||||  ||||||||||| ||||||||||||||||||||||||||||||||| | |||||||||| |||||||||||||||||    
T  5102417 ccacgaactatcatcgatttccatgtaccttccaaatcttcgaagtctttgggtggagtgcagttcagaacgtcaactttctcatgatgcagcaataatt 5102318  T
Q  120 ttggatgccttgtatgccatcagttataatgagttggaaccaactacagctacatcacgagtatcaaaacattccgtgaagtctcttttaattcaaattg 219  Q
    |||||||||||| || |||| | |  ||| ||||||||||||||| || |||| |||| |||||||||||||||| ||||||||||||||||||||||||    
T  5102317 ttggatgccttgcataccataaatcgtaaggagttggaaccaactgcaactacgtcacaagtatcaaaacattccttgaagtctcttttaattcaaattg 5102218  T
Q  220 gaatgaattgccaagccaccaatattctgaaagatataattttacaggtttgacatactc 279  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  5102217 gaatgaattgccaagccactaatattctgaaagatataattttacaggtttgacatactc 5102158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 20 - 279
Target Start/End: Complemental strand, 5137469 - 5137210
Alignment:
Q  20 ccacggactatcatcgatttcccagtaccttccaagtcttcgaagtctttgggtggagtgcagttcagagcttcaactttcttatgatgcagcaataatt 119  Q
    ||||| |||||||||||||| |  ||||||||||||||||||||||||||||||||||||||||||||| | |||||||||| |||||||||||||||||    
T  5137469 ccacgaactatcatcgattttcgtgtaccttccaagtcttcgaagtctttgggtggagtgcagttcagaacgtcaactttctcatgatgcagcaataatt 5137370  T
Q  120 ttggatgccttgtatgccatcagttataatgagttggaaccaactacagctacatcacgagtatcaaaacattccgtgaagtctcttttaattcaaattg 219  Q
    |||||||||||| || |||| | |  ||| ||||||||||||||| || |||| |||| |||||||||||||||| ||||||||||||||||||||||||    
T  5137369 ttggatgccttgcataccataaatcgtaaggagttggaaccaactgcaactacgtcacaagtatcaaaacattccttgaagtctcttttaattcaaattg 5137270  T
Q  220 gaatgaattgccaagccaccaatattctgaaagatataattttacaggtttgacatactc 279  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  5137269 gaatgaattgccaagccactaatattctgaaagatataattttacaggtttgacatactc 5137210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 26 - 307
Target Start/End: Original strand, 5426194 - 5426476
Alignment:
Q  26 actatcatcgatttcccagtaccttccaagtcttcgaagtctttgggtggagtgcagttcagagcttcaactttcttatgatgcagcaataattttggat 125  Q
    ||||||||||||||||||||||||||||| ||||| ||| ||||||||||||||||| ||||| |||||||||||| ||||||||||||||||||| |||    
T  5426194 actatcatcgatttcccagtaccttccaaatcttcaaaggctttgggtggagtgcagctcagaacttcaactttctcatgatgcagcaataattttagat 5426293  T
Q  126 gccttgtatgccatcagttataatgagttggaaccaactacagctacatcacgagtatcaaaacattccgtgaagtctcttttaattcaaattggaatga 225  Q
    |||||||||||||  |||||||| ||||||||||||||||| |||||||| | |||||||||||||||| | || |||||||||||||||||||||||||    
T  5426294 gccttgtatgccacaagttataaggagttggaaccaactactgctacatcccaagtatcaaaacattccttaaaatctcttttaattcaaattggaatga 5426393  T
Q  226 attgccaagccaccaatattctgaaagatataattttacaggtttg-acatactctctctctgacctcttttaaatgtctgtg 307  Q
    ||||||||||| |  ||||||||||||| ||||||||||||||||| |||| ||||||||||| ||| ||||| |||||||||    
T  5426394 attgccaagcctctgatattctgaaagagataattttacaggtttgaacattctctctctctgccctattttatatgtctgtg 5426476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 178; E-Value: 5e-96
Query Start/End: Original strand, 26 - 287
Target Start/End: Original strand, 5350672 - 5350933
Alignment:
Q  26 actatcatcgatttcccagtaccttccaagtcttcgaagtctttgggtggagtgcagttcagagcttcaactttcttatgatgcagcaataattttggat 125  Q
    ||||||||||||||||||||  ||||||||||||| ||||||||| |||||||| || || || |||||||||||| |||||||||||||||||||||||    
T  5350672 actatcatcgatttcccagtgtcttccaagtcttcaaagtctttgtgtggagtgtagctcggaacttcaactttctcatgatgcagcaataattttggat 5350771  T
Q  126 gccttgtatgccatcagttataatgagttggaaccaactacagctacatcacgagtatcaaaacattccgtgaagtctcttttaattcaaattggaatga 225  Q
    |||||||||||||  | |||||| ||||||||| |||||||||||||||||  |||||||||||||||| ||||||||||||||||||||||||||||||    
T  5350772 gccttgtatgccacaaattataaggagttggaatcaactacagctacatcaaaagtatcaaaacattccttgaagtctcttttaattcaaattggaatga 5350871  T
Q  226 attgccaagccaccaatattctgaaagatataattttacaggtttgacatactctctctctg 287  Q
    ||||||||||||| |||||||||||||| ||||||||||||||||||||| |||| ||||||    
T  5350872 attgccaagccactaatattctgaaagagataattttacaggtttgacattctctttctctg 5350933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 26 - 284
Target Start/End: Original strand, 5447865 - 5448123
Alignment:
Q  26 actatcatcgatttcccagtaccttccaagtcttcgaagtctttgggtggagtgcagttcagagcttcaactttcttatgatgcagcaataattttggat 125  Q
    |||||||||| ||||||||||||| |||||||||||||||||||||||| ||| ||| ||||| |||||||||||| |||| ||||||||||||||||||    
T  5447865 actatcatcgttttcccagtacctaccaagtcttcgaagtctttgggtgcagttcagctcagaacttcaactttctcatgaggcagcaataattttggat 5447964  T
Q  126 gccttgtatgccatcagttataatgagttggaaccaactacagctacatcacgagtatcaaaacattccgtgaagtctcttttaattcaaattggaatga 225  Q
    || ||||||||||  | |||||| |||||||||| |||  ||| |||||||| | ||||||| |||| | ||||||||||||||||||||||||||||||    
T  5447965 gctttgtatgccacaaattataaggagttggaactaacggcagttacatcacaaatatcaaaccatttcttgaagtctcttttaattcaaattggaatga 5448064  T
Q  226 attgccaagccaccaatattctgaaagatataattttacaggtttgacatactctctct 284  Q
    ||||| ||| |||  ||||||||||||| |||||||||||||| |||||| ||||||||    
T  5448065 attgcgaagtcactgatattctgaaagagataattttacaggtctgacattctctctct 5448123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 20 - 186
Target Start/End: Complemental strand, 5128220 - 5128054
Alignment:
Q  20 ccacggactatcatcgatttcccagtaccttccaagtcttcgaagtctttgggtggagtgcagttcagagcttcaactttcttatgatgcagcaataatt 119  Q
    ||||| |||||| ||||| ||||||||||||||||||||||||||||||||| |||||||||| ||||| |||||||||||| |||||||||||||||||    
T  5128220 ccacgaactatcgtcgatgtcccagtaccttccaagtcttcgaagtctttggatggagtgcagctcagaacttcaactttctcatgatgcagcaataatt 5128121  T
Q  120 ttggatgccttgtatgccatcagttataatgagttggaaccaactacagctacatcacgagtatcaa 186  Q
    |||||||||||||||||||  | |||||| |||||||||| |||| ||  |||||||| ||||||||    
T  5128120 ttggatgccttgtatgccacaaattataaggagttggaacaaactgcaagtacatcacaagtatcaa 5128054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 26 - 187
Target Start/End: Complemental strand, 5157425 - 5157264
Alignment:
Q  26 actatcatcgatttcccagtaccttccaagtcttcgaagtctttgggtggagtgcagttcagagcttcaactttcttatgatgcagcaataattttggat 125  Q
    ||||||||||||||||||||  |||||||||||||||||||| |||||||||||||| || || |||||||||||| |||||||||||||||||||||||    
T  5157425 actatcatcgatttcccagtgtcttccaagtcttcgaagtctatgggtggagtgcagctcggaacttcaactttctcatgatgcagcaataattttggat 5157326  T
Q  126 gccttgtatgccatcagttataatgagttggaaccaactacagctacatcacgagtatcaaa 187  Q
    ||| |||||||||  | || |||  | ||||||||||||||||||||||||| | |||||||    
T  5157325 gccctgtatgccacaaattctaagaatttggaaccaactacagctacatcacaattatcaaa 5157264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 169 - 306
Target Start/End: Complemental strand, 5157252 - 5157115
Alignment:
Q  169 ctacatcacgagtatcaaaacattccgtgaagtctcttttaattcaaattggaatgaattgccaagccaccaatattctgaaagatataattttacaggt 268  Q
    ||||||| | ||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  5157252 ctacatcccaagtatcaaaacattcctcgaagtctcttttaattcaaattggaatgaattgccaagccactaatattctgaaagatataattttacaggt 5157153  T
Q  269 ttgacatactctctctctgacctcttttaaatgtctgt 306  Q
    |||  ||||||||||| |  || |||||| ||||||||    
T  5157152 ttgcaatactctctctatctccccttttatatgtctgt 5157115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 26 - 138
Target Start/End: Original strand, 5096992 - 5097104
Alignment:
Q  26 actatcatcgatttcccagtaccttccaagtcttcgaagtctttgggtggagtgcagttcagagcttcaactttcttatgatgcagcaataattttggat 125  Q
    ||||| |||||||||| |||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||| ||||||| |||||||||||||||    
T  5096992 actattatcgatttccaagtaccttccaagtcttcgaagtctttgggtggagtgcagctcagaacttcaactttctcatgatgctgcaataattttggat 5097091  T
Q  126 gccttgtatgcca 138  Q
    ||||| |||||||    
T  5097092 gccttatatgcca 5097104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 26 - 127
Target Start/End: Complemental strand, 5066491 - 5066390
Alignment:
Q  26 actatcatcgatttcccagtaccttccaagtcttcgaagtctttgggtggagtgcagttcagagcttcaactttcttatgatgcagcaataattttggat 125  Q
    ||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||| | |||||||||| |||||||| ||||||| ||||||    
T  5066491 actatcatcaatttccaagtaccttccaagtcttcgaagtctttgggtggagtgcagttcagaacatcaactttctaatgatgcaacaataatattggat 5066392  T
Q  126 gc 127  Q
    ||    
T  5066391 gc 5066390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 169 - 285
Target Start/End: Original strand, 5371028 - 5371144
Alignment:
Q  169 ctacatcacgagtatcaaaacattccgtgaagtctcttttaattcaaattggaatgaattgccaagccaccaatattctgaaagatataattttacaggt 268  Q
    ||||||||| ||||||||||||||||   | |||||||||||||||||||||||||||||||| |   || |||||||||||||| ||||||||||||||    
T  5371028 ctacatcacaagtatcaaaacattcctcaacgtctcttttaattcaaattggaatgaattgccgaataactaatattctgaaagagataattttacaggt 5371127  T
Q  269 ttgacatactctctctc 285  Q
    |||||||||||||||||    
T  5371128 ttgacatactctctctc 5371144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 26 - 187
Target Start/End: Original strand, 5370855 - 5371016
Alignment:
Q  26 actatcatcgatttcccagtaccttccaagtcttcgaagtctttgggtggagtgcagttcagagcttcaactttcttatgatgcagcaataattttggat 125  Q
    ||||||||| |||| | |||||||||||| ||||||||||||||||||||| || || || || |||||||||||| |||||||||||| ||||||||||    
T  5370855 actatcatcaattttcaagtaccttccaattcttcgaagtctttgggtggaatgtagctcggaacttcaactttctcatgatgcagcaacaattttggat 5370954  T
Q  126 gccttgtatgccatcagttataatgagttggaaccaactacagctacatcacgagtatcaaa 187  Q
    | ||| ||||| ||   |||||| ||| ||||||||||| ||  |||||||| |||||||||    
T  5370955 gtcttatatgcgatagattataaggagatggaaccaactgcaattacatcacaagtatcaaa 5371016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 169 - 280
Target Start/End: Complemental strand, 5128041 - 5127930
Alignment:
Q  169 ctacatcacgagtatcaaaacattccgtgaagtctcttttaattcaaattggaatgaattgccaagccaccaatattctgaaagatataattttacaggt 268  Q
    ||||||||| ||||||||||||||||  |||||| || |||||||||||||||| ||||||||||| ||| |||||||||||||  || |||||||||||    
T  5128041 ctacatcacaagtatcaaaacattcctcgaagtcgctattaattcaaattggaaagaattgccaagtcactaatattctgaaagggattattttacaggt 5127942  T
Q  269 ttgacatactct 280  Q
    ||||||||||||    
T  5127941 ttgacatactct 5127930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 182 - 281
Target Start/End: Original strand, 5397447 - 5397546
Alignment:
Q  182 atcaaaacattccgtgaagtctcttttaattcaaattggaatgaattgccaagccaccaatattctgaaagatataattttacaggtttgacatactctc 281  Q
    |||||||||||||  ||||||||||||||||||||| |||| |||||| ||||   |||||||||||||||| ||||||||||||||||| |||||||||    
T  5397447 atcaaaacattccccgaagtctcttttaattcaaatgggaacgaattgtcaagttgccaatattctgaaagagataattttacaggtttggcatactctc 5397546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 169 - 271
Target Start/End: Original strand, 5097165 - 5097267
Alignment:
Q  169 ctacatcacgagtatcaaaacattccgtgaagtctcttttaattcaaattggaatgaattgccaagccaccaatattctgaaagatataattttacaggt 268  Q
    ||||||||| ||||||| |||||||| | |||||||||||||||||||| |||| ||||||||||| |||||||||| ||||||| | |||| |||||||    
T  5097165 ctacatcacaagtatcagaacattccttcaagtctcttttaattcaaatgggaacgaattgccaagtcaccaatattttgaaagagaaaattgtacaggt 5097264  T
Q  269 ttg 271  Q
    |||    
T  5097265 ttg 5097267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 46 - 186
Target Start/End: Original strand, 2938396 - 2938536
Alignment:
Q  46 accttccaagtcttcgaagtctttgggtggagtgcagttcagagcttcaactttcttatgatgcagcaataattttggatgccttgtatgccatcagtta 145  Q
    ||||||||||||||| ||||||||||||||| ||  | |||||  ||||||||||| |||||||||||| | ||||||||| ||| ||||| ||   |||    
T  2938396 accttccaagtcttccaagtctttgggtggaatgttgctcagaatttcaactttctcatgatgcagcaacagttttggatgtcttatatgcgatagatta 2938495  T
Q  146 taatgagttggaaccaactacagctacatcacgagtatcaa 186  Q
    ||| ||| ||||||||||||||  |||||||| ||||||||    
T  2938496 taaggagatggaaccaactacaattacatcacaagtatcaa 2938536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 182 - 271
Target Start/End: Complemental strand, 5354198 - 5354109
Alignment:
Q  182 atcaaaacattccgtgaagtctcttttaattcaaattggaatgaattgccaagccaccaatattctgaaagatataattttacaggtttg 271  Q
    |||| |||||||| | |||||||||||||||||||| |||||||||||||||| ||| |||||||||||||| | |||||| ||||||||    
T  5354198 atcacaacattccttcaagtctcttttaattcaaatgggaatgaattgccaagtcactaatattctgaaagagaaaattttgcaggtttg 5354109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 27 - 137
Target Start/End: Original strand, 5383611 - 5383721
Alignment:
Q  27 ctatcatcgatttcccagtaccttccaagtcttcgaagtctttgggtggagtgcagttcagagcttcaactttcttatgatgcagcaataattttggatg 126  Q
    |||||||| |||||| |||||||||||||| |||| |||||||||||| |||| || || || |||||| ||||| ||||||| ||||| |||||||| |    
T  5383611 ctatcatcaatttccaagtaccttccaagtattcgcagtctttgggtgaagtgtagctcggaacttcaagtttctcatgatgctgcaattattttggaag 5383710  T
Q  127 ccttgtatgcc 137  Q
    |||| ||||||    
T  5383711 ccttatatgcc 5383721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 26 - 138
Target Start/End: Complemental strand, 5073705 - 5073593
Alignment:
Q  26 actatcatcgatttcccagtaccttccaagtcttcgaagtctttgggtggagtgcagttcagagcttcaactttcttatgatgcagcaataattttggat 125  Q
    ||||||||| |||||| | ||||||||| | |||||| ||||||||||||| ||| | ||| | |||||||||||| | ||||||| || ||||||||||    
T  5073705 actatcatctatttccaattaccttccatggcttcgatgtctttgggtggaatgcggatcaaaacttcaactttctcaagatgcagaaagaattttggat 5073606  T
Q  126 gccttgtatgcca 138  Q
    ||||| |||||||    
T  5073605 gccttatatgcca 5073593  T

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Target: chr6; HSP #20
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 196 - 275
Target Start/End: Complemental strand, 5181548 - 5181469
Alignment:
Q  196 tgaagtctcttttaattcaaattggaatgaattgccaagccaccaatattctgaaagatataattttacaggtttgacat 275  Q
    |||| ||||| || |||||||| |||||||||||||||| |||||||||||||| |||||  ||||||||||||| ||||    
T  5181548 tgaaatctctgtttattcaaataggaatgaattgccaagtcaccaatattctgagagataacattttacaggtttcacat 5181469  T

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Target: chr6; HSP #21
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 182 - 284
Target Start/End: Original strand, 5434685 - 5434787
Alignment:
Q  182 atcaaaacattccgtgaagtctcttttaattcaaattggaatgaattgccaagccaccaatattctgaaagatataattttacaggtttgacatactctc 281  Q
    ||||||||||||| | || |||||||||||||||||  ||||||||||| ||  |||||| |||||  |||| || ||||||||||||||| || |||||    
T  5434685 atcaaaacattccttcaactctcttttaattcaaatgagaatgaattgcaaactcaccaacattctcgaagagatcattttacaggtttgaaatgctctc 5434784  T
Q  282 tct 284  Q
    |||    
T  5434785 tct 5434787  T

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Target: chr6; HSP #22
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 46 - 127
Target Start/End: Complemental strand, 5689936 - 5689855
Alignment:
Q  46 accttccaagtcttcgaagtctttgggtggagtgcagttcagagcttcaactttcttatgatgcagcaataattttggatgc 127  Q
    ||||| |||| ||||||||||| ||||| |||||  ||||||| |||||||||||| | ||||||  ||| |||||||||||    
T  5689936 acctttcaaggcttcgaagtctatgggtagagtgtggttcagaacttcaactttctgaagatgcaaaaatcattttggatgc 5689855  T

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Target: chr6; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 191 - 271
Target Start/End: Complemental strand, 5066269 - 5066189
Alignment:
Q  191 ttccgtgaagtctcttttaattcaaattggaatgaattgccaagccaccaatattctgaaagatataattttacaggtttg 271  Q
    |||| |||||||| || |||| ||||| || ||||||||||||| |||||||| ||||||||| |  || |||||||||||    
T  5066269 ttccatgaagtctgttctaatacaaatgggtatgaattgccaagtcaccaataatctgaaagaaaacatgttacaggtttg 5066189  T

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Target: chr6; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 46 - 138
Target Start/End: Original strand, 5177046 - 5177138
Alignment:
Q  46 accttccaagtcttcgaagtctttgggtggagtgcagttcagagcttcaactttcttatgatgcagcaataattttggatgccttgtatgcca 138  Q
    ||||| |||| ||||||||||| ||||| |||||  ||||||| ||||||||||||   ||||||  ||| ||||||||||| || |||||||    
T  5177046 acctttcaaggcttcgaagtctatgggtagagtgtggttcagaacttcaactttctgtagatgcaaaaatcattttggatgctttatatgcca 5177138  T

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Target: chr6; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 198 - 286
Target Start/End: Complemental strand, 5243480 - 5243392
Alignment:
Q  198 aagtctcttttaattcaaattggaatgaattgccaagccaccaatattctgaaagatataattttacaggtttgacatactctctctct 286  Q
    |||||| || |||| ||||| ||||||||||||||||  ||||||| ||| ||||| |  |||||||||||||| ||| |||| |||||    
T  5243480 aagtctgttctaatacaaatgggaatgaattgccaagtaaccaataatctaaaagaaaacattttacaggtttgtcattctctatctct 5243392  T

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Target: chr6; HSP #26
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 46 - 138
Target Start/End: Original strand, 5278873 - 5278965
Alignment:
Q  46 accttccaagtcttcgaagtctttgggtggagtgcagttcagagcttcaactttcttatgatgcagcaataattttggatgccttgtatgcca 138  Q
    ||||| |||| ||||||||||| ||||| |||||  ||||||| ||||||||||||   ||||||  ||| ||||||||||| || |||||||    
T  5278873 acctttcaaggcttcgaagtctatgggtagagtgtggttcagaacttcaactttctgtagatgcaaaaatcattttggatgctttatatgcca 5278965  T

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Target: chr6; HSP #27
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 48 - 127
Target Start/End: Original strand, 5397256 - 5397335
Alignment:
Q  48 cttccaagtcttcgaagtctttgggtggagtgcagttcagagcttcaactttcttatgatgcagcaataattttggatgc 127  Q
    |||||||| |||||||||||||| ||||| |||| ||| ||   ||||||||||  |||||||  |||||||||||||||    
T  5397256 cttccaaggcttcgaagtctttgcgtggattgcaattctgaagatcaactttctcttgatgcaaaaataattttggatgc 5397335  T

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Target: chr6; HSP #28
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 30 - 136
Target Start/End: Complemental strand, 5181735 - 5181629
Alignment:
Q  30 tcatcgatttcccagtaccttccaagtcttcgaagtctttgggtggagtgcagttcagagcttcaactttcttatgatgcagcaataattttggatgcct 129  Q
    ||||| || ||| ||||||||||| | |||||| |||||||||| |||||  | ||||| |||||||||||| | ||  ||| || |||||||||||| |    
T  5181735 tcatctatgtccaagtaccttccatggcttcgatgtctttgggttgagtgtggctcagaacttcaactttctcaagacacagaaagaattttggatgctt 5181636  T
Q  130 tgtatgc 136  Q
    | |||||    
T  5181635 tatatgc 5181629  T

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Target: chr6; HSP #29
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 207 - 275
Target Start/End: Complemental strand, 5284007 - 5283942
Alignment:
Q  207 ttaattcaaattggaatgaattgccaagccaccaatattctgaaagatataattttacaggtttgacat 275  Q
    ||||||||||| |||||||||| ||||| |||| ||||||| ||||||   ||||| ||||||||||||    
T  5284007 ttaattcaaatgggaatgaatttccaagtcaccgatattctcaaagat---attttgcaggtttgacat 5283942  T

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Target: chr7 (Bit Score: 83; Significance: 3e-39; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 44 - 270
Target Start/End: Complemental strand, 36213608 - 36213382
Alignment:
Q  44 gtaccttccaagtcttcgaagtctttgggtggagtgcagttcagagcttcaactttcttatgatgcagcaataattttggatgccttgtatgccatcagt 143  Q
    ||||||||| ||||| ||||||||||||||| ||||||| ||||||  |||||||||| ||||||||| |||||||||||||||||| |||||||  | |    
T  36213608 gtaccttccgagtctacgaagtctttgggtgcagtgcagctcagagtctcaactttctcatgatgcagaaataattttggatgccttatatgccactaat 36213509  T
Q  144 tataatgagttggaaccaactacagctacatcacgagtatcaaaacattccgtgaagtctcttttaattcaaattggaatgaattgccaagccaccaata 243  Q
    ||||| || ||||||| | || ||  |||||| | |||||||| | ||||| |||| ||| |||| |||||||| |||||||||||||||    ||||||    
T  36213508 tataaggaattggaactagctccacatacatcgcaagtatcaagaaattccttgaaatcttttttcattcaaatgggaatgaattgccaactttccaata 36213409  T
Q  244 ttctgaaagatataattttacaggttt 270  Q
    || ||||||| | |||| |||||||||    
T  36213408 ttttgaaagagaaaattgtacaggttt 36213382  T

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Target: chr5 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 191 - 274
Target Start/End: Original strand, 8878106 - 8878189
Alignment:
Q  191 ttccgtgaagtctcttttaattcaaattggaatgaattgccaagccaccaatattctgaaagatataattttacaggtttgaca 274  Q
    |||| |||||||||| || |||||||| |||||||||||||||   || |||| ||||||||| | ||||||||||||||||||    
T  8878106 ttccctgaagtctctatttattcaaatgggaatgaattgccaattaactaatactctgaaagagaaaattttacaggtttgaca 8878189  T

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Target: scaffold0294 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: scaffold0294
Description:

Target: scaffold0294; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 26 - 88
Target Start/End: Complemental strand, 8697 - 8635
Alignment:
Q  26 actatcatcgatttcccagtaccttccaagtcttcgaagtctttgggtggagtgcagttcaga 88  Q
    ||||||||| |||||| |||||||||||||| ||||||||||||||||| |||| || |||||    
T  8697 actatcatcaatttccaagtaccttccaagtattcgaagtctttgggtgaagtgtagctcaga 8635  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 255 - 284
Target Start/End: Complemental strand, 48847644 - 48847615
Alignment:
Q  255 ataattttacaggtttgacatactctctct 284  Q
    ||||||||||||||||||||||||||||||    
T  48847644 ataattttacaggtttgacatactctctct 48847615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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