View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9612_low_49 (Length: 306)
Name: NF9612_low_49
Description: NF9612
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9612_low_49 |
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Alignment Details
Target: chr8 (Bit Score: 221; Significance: 1e-121; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 19 - 300
Target Start/End: Complemental strand, 4512911 - 4512630
Alignment:
| Q |
19 |
aagttctcccttgccctgatgttccaatcaacactgttggcttaatttgctgaaaaagaaaacattgaaatgtgaaaaatttgaaacttcttttctctcc |
118 |
Q |
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| T |
4512911 |
aagttctcccttgccctgatgttccaatcaacactgttggcttaatttgctgaaaaagaaaacattgaaatgtgaaaaatttgaaacttcttttctctcc |
4512812 |
T |
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| Q |
119 |
gannnnnnnnnnnnnnnnnnnagtggacgaataggagacagagattgtactttaacagcatctacaagtttctcaacaggttcgtgttcatgagcccatg |
218 |
Q |
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| T |
4512811 |
gagtgtgtgtgcttgtgtgtgagtggacgaataggagacagagattgtactttaacagcatctacaagtttctcaacaggttcgtgttcatgagcccatg |
4512712 |
T |
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| Q |
219 |
gcttcttgaaatgttgaagtgattctttgcgagaactcacaatcaaaccctgcagagatagaagaattataagaataatcta |
300 |
Q |
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| T |
4512711 |
gcttcttgaaatgttgaagtgattctttgcgagaactcacaatcaaaccctgcagagatagaagaattataagagtaatcta |
4512630 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 193 - 240
Target Start/End: Original strand, 43206652 - 43206699
Alignment:
| Q |
193 |
aacaggttcgtgttcatgagcccatggcttcttgaaatgttgaagtga |
240 |
Q |
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| T |
43206652 |
aacaggctcgtgttcatgagcccaaggcttcttgaagtgttgaagtga |
43206699 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 57; Significance: 8e-24; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 165 - 269
Target Start/End: Original strand, 43432638 - 43432742
Alignment:
| Q |
165 |
gtactttaacagcatctacaagtttctcaacaggttcgtgttcatgagcccatggcttcttgaaatgttgaagtgattctttgcgagaactcacaatcaa |
264 |
Q |
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| T |
43432638 |
gtacattaacagcatcaagaaggtttttaacaggttcgtgttcatgagcccacggcttcttgaaatgttggagtgattctttacgggaactgacaatcaa |
43432737 |
T |
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| Q |
265 |
accct |
269 |
Q |
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|||| |
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| T |
43432738 |
tccct |
43432742 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 33 - 102
Target Start/End: Original strand, 3533733 - 3533801
Alignment:
| Q |
33 |
cctgatgttccaatcaacactgttggcttaatttgctgaaaaagaaaacattgaaatgtgaaaaatttga |
102 |
Q |
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| T |
3533733 |
cctgatattccaatcaacactgttggcttaatttgccg-aaaagaaaacattcaaatatgagaaatttga |
3533801 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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