View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9612_low_5 (Length: 683)
Name: NF9612_low_5
Description: NF9612
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9612_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 509; Significance: 0; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 509; E-Value: 0
Query Start/End: Original strand, 17 - 588
Target Start/End: Complemental strand, 13882104 - 13881527
Alignment:
| Q |
17 |
gcagaacatgataataaggctgaaagtgaaggtgaagctgatgaaaatggatgatgcgcatgaagttgaaggagatggaacgtcattgccattttctaaa |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13882104 |
gcagaacatgataataaggctgaaagtgaaggtgaagctgatgaaaatggataatgcgcatgaagttgaaggagatggaacgtcattgccattttctaaa |
13882005 |
T |
|
| Q |
117 |
cgtgaagccattggcaaagcatgtaccccatttatgttcttactagacattcactcccttctgactttcaaaaccttaattggttttctctgtagtttca |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13882004 |
cgtgaagccattggcaaagcatgtaccccatttatgttcttactagacattcactcccttctgactttcaaaaccttaattggttttctctgtagtttca |
13881905 |
T |
|
| Q |
217 |
a-------gttgtataattagtgtataattagcacagttacctttcattcagtatgattgtactctactaaaattataatgtctaaattatacccttata |
309 |
Q |
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| T |
13881904 |
actttcaagttgtataattattgtataattagcacagttacctttcattcagtatgattgtactctactaaaattataatgtctaaattatacccttata |
13881805 |
T |
|
| Q |
310 |
taaacttgggaaagatgatacgtaaacttgttaaacaggttaaattgttaaagccataagttcctctttttatgacattggtaccattcattctttctga |
409 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13881804 |
taaacttgggaaagatgatacataaacttgttaaacaggttaaattgttaaagccataagttcctctttttatgacattggtaccattcattctttctga |
13881705 |
T |
|
| Q |
410 |
cacttaatgcgtgtacttctatttcagcttcaagatgctgtgactgatgagatggataataagcttcctcaactatatgcatatgaaaaatcaataaaac |
509 |
Q |
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| T |
13881704 |
cacttaatgtatgtacttctatttcagcttcaagatgctgtgactgatgagatggatattaagcttcttcaactatatgcatatg-aaaatcaataaaac |
13881606 |
T |
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| Q |
510 |
ttgaaaagtttgtcgatatagtttaccacataaatgcttgtgttctacacgattagaacatatatcgtattgaatatgc |
588 |
Q |
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| T |
13881605 |
ttgaaaagtttgtcgatatagtttaccacgaaaatgcttgtgttctacacgattagaacatatatcgtattgaatatgc |
13881527 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 102; E-Value: 3e-50
Query Start/End: Original strand, 332 - 587
Target Start/End: Complemental strand, 16022693 - 16022434
Alignment:
| Q |
332 |
taaacttgttaaacaggttaaattgttaaagccataag-ttcctctttttatgacattggtaccattcattctttctgacacttaatgcgtgtacttcta |
430 |
Q |
| |
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||||||||||||||||||||||| ||||||||||| ||||||||||||| | ||| | ||||||||||||||||| ||| | |||||| ||| |
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| T |
16022693 |
taaacttgttaaacaggttaaatgcataaagccataaaattcctctttttataagcttgatgtcattcattctttctgacccttcaattatgtactccta |
16022594 |
T |
|
| Q |
431 |
tttcagcttcaagatgctgtgactgatgagatggataataagcttcctcaactatatgcatatgaaaaatcaataaaacttgaaaagtttgtcgatatag |
530 |
Q |
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||||||||||||| || || || ||||||||||||||||||||| | |||||||||||||||||| ||||||| ||||| || ||||||||||||||||| |
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| T |
16022593 |
tttcagcttcaagctgttgcgagtgatgagatggataataagctgcttcaactatatgcatatgagaaatcaagaaaacctggaaagtttgtcgatatag |
16022494 |
T |
|
| Q |
531 |
tttaccacataaatgcttgtg---ttctacacgattagaacatatatcgtattgaatatg |
587 |
Q |
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|||| ||| ||||||| ||| |||| || ||| |||||||||||||||||||||||| |
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| T |
16022493 |
tttatcacgaaaatgctcgtgttcttcttcatgatgagaacatatatcgtattgaatatg |
16022434 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 386 - 588
Target Start/End: Original strand, 14389488 - 14389688
Alignment:
| Q |
386 |
attggtaccattcattctttctgacacttaatgcgtgtacttctatttcagcttcaagatgctgtgactgatgagatggataataagcttcctcaactat |
485 |
Q |
| |
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|||||||||||| ||| ||||||||||| || | |||||| |||| ||||||| | || || || || || ||||||||||||||||| |||||||| |
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| T |
14389488 |
attggtaccattaattttttctgacactgaaagtatgtactcttatt--agcttcacgctgttgcgagtggtgggatggataataagcttcttcaactat |
14389585 |
T |
|
| Q |
486 |
atgcatatgaaaaatcaataaaacttgaaaagtttgtcgatatagtttaccacataaatgcttgtgttctacacgattagaacatatatcgtattgaata |
585 |
Q |
| |
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|||||| ||| ||||||| ||| |||| ||||||||| ||||||||||| ||| |||| || ||||||| || ||| |||||||||| |||||||||| |
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| T |
14389586 |
atgcatttgacaaatcaagaaagcttggaaagtttgttgatatagtttatcacgaaaattctcgtgttcttcatgatgagaacatatactgtattgaata |
14389685 |
T |
|
| Q |
586 |
tgc |
588 |
Q |
| |
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||| |
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| T |
14389686 |
tgc |
14389688 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 19 - 118
Target Start/End: Complemental strand, 16024562 - 16024464
Alignment:
| Q |
19 |
agaacatgataataaggctgaaagtgaaggtgaagctgatgaaaatggatgatgcgcatgaagttgaaggagatggaacgtcattgccattttctaaacg |
118 |
Q |
| |
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|||||||||| |||||||||||||||||||||||||||| | ||||| |||||| ||||| ||||||||||||||||| ||||| ||||||||| |||| |
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| T |
16024562 |
agaacatgatgataaggctgaaagtgaaggtgaagctgaag-gaatggctgatgcacatgatgttgaaggagatggaacatcattaccattttctgaacg |
16024464 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 19 - 111
Target Start/End: Complemental strand, 13883897 - 13883806
Alignment:
| Q |
19 |
agaacatgataataaggctgaaagtgaaggtgaagctgatgaaaatggatgatgcgcatgaagttgaaggagatggaacgtcattgccatttt |
111 |
Q |
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|||||||||||||||||||||||||| |||||||||||| | |||| |||||||||||| ||||||| |||||||| || ||||||||||| |
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| T |
13883897 |
agaacatgataataaggctgaaagtggaggtgaagctgaag-cgatggctgatgcgcatgatgttgaagaagatggaaagttattgccatttt |
13883806 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 619 - 665
Target Start/End: Complemental strand, 13881506 - 13881460
Alignment:
| Q |
619 |
catttgaagtttgactcttgcctatttaaatatgctcctggagtttt |
665 |
Q |
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| T |
13881506 |
catttgaagtttgactcttgcctatttaaatatgctcctggagtttt |
13881460 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 19 - 113
Target Start/End: Original strand, 14393132 - 14393221
Alignment:
| Q |
19 |
agaacatgataataaggctgaaagtgaaggtgaagctgatgaaaatggatgatgcgcatgaagttgaaggagatggaacgtcattgccattttct |
113 |
Q |
| |
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||||| ||||| ||||||||||||||||||||||||| | | |||| | |||| | | |||||||||||||||| |||||||||||||||| |
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| T |
14393132 |
agaacgtgatagtaaggctgaaagtgaaggtgaagctaa--atgatggctaatgcccct---gttgaaggagatggaatgtcattgccattttct |
14393221 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 41; Significance: 0.00000000000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 454 - 534
Target Start/End: Original strand, 48707228 - 48707308
Alignment:
| Q |
454 |
tgatgagatggataataagcttcctcaactatatgcatatgaaaaatcaataaaacttgaaaagtttgtcgatatagttta |
534 |
Q |
| |
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||||||||||| ||||||||||| ||||||| ||||||| | ||||||| |||||||| |||| |||| ||||||||||| |
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| T |
48707228 |
tgatgagatggttaataagcttcttcaactaaatgcataccagaaatcaagaaaacttggaaagcttgttgatatagttta |
48707308 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.00000000002; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 452 - 508
Target Start/End: Complemental strand, 26200174 - 26200118
Alignment:
| Q |
452 |
actgatgagatggataataagcttcctcaactatatgcatatgaaaaatcaataaaa |
508 |
Q |
| |
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||||||||||||||||| || |||| ||||||||||||||||||| |||||| |||| |
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| T |
26200174 |
actgatgagatggataacaaacttcttcaactatatgcatatgaacaatcaagaaaa |
26200118 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 452 - 584
Target Start/End: Complemental strand, 29623333 - 29623198
Alignment:
| Q |
452 |
actgatgagatggataataagcttcctcaactatatgcatatgaaaaatcaataaaacttgaaaagtttgtcgatatagtttaccacataaatgcttgtg |
551 |
Q |
| |
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||||||||||||||||| || |||| |||||||||||||| |||| |||||| |||| || || ||| | ||||||||||| || |||||| ||| |
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| T |
29623333 |
actgatgagatggataacaaacttcttcaactatatgcatgtgaacaatcaagaaaatctggaagcttttttgatatagtttatcatgaaaatgcccgtg |
29623234 |
T |
|
| Q |
552 |
---ttctacacgattagaacatatatcgtattgaat |
584 |
Q |
| |
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|||| || ||| ||||||||||||||||||||| |
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| T |
29623233 |
ttcttcttcatgatgagaacatatatcgtattgaat |
29623198 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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