View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9612_low_55 (Length: 292)
Name: NF9612_low_55
Description: NF9612
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9612_low_55 |
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Alignment Details
Target: chr1 (Bit Score: 178; Significance: 5e-96; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 178; E-Value: 5e-96
Query Start/End: Original strand, 24 - 274
Target Start/End: Original strand, 10984317 - 10984564
Alignment:
| Q |
24 |
cctataaagaaatggaaatgaaataaagaaaatgaagttataataaacttcattatttaaaattgtctatttaaaacataccgaattaaaaattgaaaaa |
123 |
Q |
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| T |
10984317 |
cctataaagaaatggaaatgaaataaagaaaatgaagttataataaacttcattatttaaaattgtctatttggaacatacagaagtaaaaattgaaaaa |
10984416 |
T |
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| Q |
124 |
tatgatgccatatatttcaatcaatcaatatatttcacnnnnnnncttcgaaatatatttatctaaccagataactttgtaggtcatcagtgtcttttcc |
223 |
Q |
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| T |
10984417 |
tatgatgctatatatttcaatcaat----atatttcactttttttcttcgaaatatatttatctaaccagataactttttaggtcatcagtgtcttttgc |
10984512 |
T |
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| Q |
224 |
tattaa-caacaggttcatccaataaagatggtgctatgaagccaattcaca |
274 |
Q |
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| T |
10984513 |
tattaaccaacaggttcatccaataaagatggtgctatgaagccaattcaca |
10984564 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 51 - 141
Target Start/End: Complemental strand, 11027866 - 11027776
Alignment:
| Q |
51 |
gaaaatgaagttataataaacttcattatttaaaattgtctatttaaaacataccgaattaaaaattgaaaaatatgatgccatatatttc |
141 |
Q |
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| T |
11027866 |
gaaaatgaaattattataaacttgattatttattattttttgtttagaacataacgaagtgaaaattgaaaaatatgatgcgatatatttc |
11027776 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 24 - 80
Target Start/End: Original strand, 11011681 - 11011736
Alignment:
| Q |
24 |
cctataaagaaatggaaatgaaataaagaaaatgaagttataataaacttcattatt |
80 |
Q |
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| T |
11011681 |
cctataaagaaatggaaattagataaagaaa-tgaagttacaataaacttcattatt |
11011736 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 51 - 85
Target Start/End: Original strand, 10915485 - 10915519
Alignment:
| Q |
51 |
gaaaatgaagttataataaacttcattatttaaaa |
85 |
Q |
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| T |
10915485 |
gaaaatgaaattataataaacttcattatttaaaa |
10915519 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 32 - 74
Target Start/End: Original strand, 11008527 - 11008569
Alignment:
| Q |
32 |
gaaatggaaatgaaataaagaaaatgaagttataataaacttc |
74 |
Q |
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| T |
11008527 |
gaaatggaattgaaataaagaaaatgaaattataattaacttc |
11008569 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 25 - 81
Target Start/End: Original strand, 10915369 - 10915425
Alignment:
| Q |
25 |
ctataaagaaatggaaatgaaataaagaaaatgaagttataataaacttcattattt |
81 |
Q |
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|||||| |||| |||||||| || ||||||||||| |||| |||| ||||||||||| |
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| T |
10915369 |
ctataacgaaacggaaatgagatcaagaaaatgaaattattataagcttcattattt |
10915425 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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