View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9612_low_58 (Length: 285)
Name: NF9612_low_58
Description: NF9612
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9612_low_58 |
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Alignment Details
Target: chr8 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 17 - 281
Target Start/End: Original strand, 40481097 - 40481360
Alignment:
| Q |
17 |
catttgagacaagtttgaaaaataaatagaattctcnnnnnnnnatgattacgagaatggtgagtgagttaggtctcctcttcttaagttcttggattag |
116 |
Q |
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| T |
40481097 |
catttgagacaagtttgaaaaataaatagaattctcttttttt-atgattacgagaatggtgagtgagttaggtctcctcttcttaagttcttggattag |
40481195 |
T |
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| Q |
117 |
aactaattaccaccgtagtgattcctcattggcttatcaatctttatggttgtggtgcctttcttcttcatcttctgaatctaatcctaaaatatgtgtt |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40481196 |
aactaattaccaccgtagtgattcctcattggcttatcaatctttatggttgtggtgcctttcttcttcatcttctgaatctaatcctaaaatatgtgtt |
40481295 |
T |
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| Q |
217 |
ttggattttaaagatgtttcaatgattttttaatttgataacaatggtcaatagtattatctacc |
281 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
40481296 |
ttggattttaaagatttttcaatgattttttaatttgataacaatggtcaataatattatctacc |
40481360 |
T |
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