View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9612_low_60 (Length: 282)
Name: NF9612_low_60
Description: NF9612
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9612_low_60 |
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Alignment Details
Target: chr8 (Bit Score: 260; Significance: 1e-145; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 1 - 264
Target Start/End: Complemental strand, 37922523 - 37922260
Alignment:
| Q |
1 |
gtaaatctagcaggtattatggagagagctgatgagtcattgttaccaggagtatacaaagagattggtgatgaactcaacgctgacccaactgcgttag |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37922523 |
gtaaatctagcaggtattatggagagagctgatgagtcattgttaccaggagtatacaaagagattggtgatgaactcaacgctgacccaactgcgttag |
37922424 |
T |
|
| Q |
101 |
gttctctcactcttttccgatccctggttcaagcattctgttaccctcttgctgcttaccttgtcacacgacacaatcgtgcacatgtcattgctcttgg |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
37922423 |
gttctctcactcttttccgatccctggttcaagcattctgttaccctcttgctgcttaccttgccacacgacacaatcgtgcacatgtcattgctcttgg |
37922324 |
T |
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| Q |
201 |
tgcttttctttgggctgccgctacattcctcgttgctgtctcctccaccttcttgcaggttctt |
264 |
Q |
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| T |
37922323 |
tgcttttctttgggctgccgctacattcctcgttgctgtctcctccaccttcttgcaggttctt |
37922260 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 1 - 264
Target Start/End: Complemental strand, 37926106 - 37925843
Alignment:
| Q |
1 |
gtaaatctagcaggtattatggagagagctgatgagtcattgttaccaggagtatacaaagagattggtgatgaactcaacgctgacccaactgcgttag |
100 |
Q |
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|||||||||||| |||||||| |||||||||||||||||||| | |||||||||||||||||| |||||| |||||| |||||||| ||||||||||||| |
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| T |
37926106 |
gtaaatctagcaagtattatgcagagagctgatgagtcattgcttccaggagtatacaaagaggttggtgctgaacttaacgctgatccaactgcgttag |
37926007 |
T |
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| Q |
101 |
gttctctcactcttttccgatccctggttcaagcattctgttaccctcttgctgcttaccttgtcacacgacacaatcgtgcacatgtcattgctcttgg |
200 |
Q |
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| T |
37926006 |
gttccctcactcttttccgatcccttgttcaatcattctgttaccctctggctgcttacctggccacgcgacacaatcgtgcacatgttattgctctagg |
37925907 |
T |
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| Q |
201 |
tgcttttctttgggctgccgctacattcctcgttgctgtctcctccaccttcttgcaggttctt |
264 |
Q |
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|||||||||||||||||| || || |||||||| || |||||||||||||||| ||||||||| |
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| T |
37925906 |
tgcttttctttgggctgctgccactttcctcgtcgccatctcctccaccttcttacaggttctt |
37925843 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 4 - 236
Target Start/End: Complemental strand, 37937794 - 37937562
Alignment:
| Q |
4 |
aatctagcaggtattatggagagagctgatgagtcattgttaccaggagtatacaaagagattggtgatgaactcaacgctgacccaactgcgttaggtt |
103 |
Q |
| |
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|||||||||||||||||||| |||| ||||| ||||||||||| |||||||||||||| | |||| || || ||||||||||| || || ||||||| |
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| T |
37937794 |
aatctagcaggtattatggaacgagccgatgaatcattgttacctggagtatacaaagaagtcggtgctgctcttaacgctgaccccaccgccttaggtt |
37937695 |
T |
|
| Q |
104 |
ctctcactcttttccgatccctggttcaagcattctgttaccctcttgctgcttaccttgtcacacgacacaatcgtgcacatgtcattgctcttggtgc |
203 |
Q |
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| T |
37937694 |
ctctcactcttttccgatcacttgttcaatcattctgttaccctcttgctacttacctcgccacccgttacaatcgttcacatgttattgctcttggtgc |
37937595 |
T |
|
| Q |
204 |
ttttctttgggctgccgctacattcctcgttgc |
236 |
Q |
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||||||||||||||||||||| ||||||||||| |
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| T |
37937594 |
ttttctttgggctgccgctacgttcctcgttgc |
37937562 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 175 - 260
Target Start/End: Original strand, 26285244 - 26285329
Alignment:
| Q |
175 |
aatcgtgcacatgtcattgctcttggtgcttttctttgggctgccgctacattcctcgttgctgtctcctccaccttcttgcaggt |
260 |
Q |
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|||||||| ||||| ||||||||||||||||||||||||||||| ||||| || || ||||| |||||||||| ||||| ||||| |
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| T |
26285244 |
aatcgtgctcatgttattgctcttggtgcttttctttgggctgctgctacttttcttgttgccttctcctccactttctttcaggt |
26285329 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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