View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9612_low_62 (Length: 277)
Name: NF9612_low_62
Description: NF9612
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9612_low_62 |
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Alignment Details
Target: chr5 (Bit Score: 95; Significance: 2e-46; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 144 - 246
Target Start/End: Complemental strand, 42264730 - 42264628
Alignment:
| Q |
144 |
cacagactctctagcacacctgagttgcaaagcaaacaaagagaatgaagaaacggacgaaatcctagccttaataattttgattctggaatgaatatgt |
243 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42264730 |
cacaaactctctagcacacctgagttgcaaagcaaacaaagagaatgaagaaacagacgaaatcctagccttaataattttgattctggaatgaatatgt |
42264631 |
T |
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| Q |
244 |
caa |
246 |
Q |
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||| |
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| T |
42264630 |
caa |
42264628 |
T |
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Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 12 - 54
Target Start/End: Complemental strand, 42264861 - 42264819
Alignment:
| Q |
12 |
aagcagagacaagcaaaagtcacgtttaacagggctacacaag |
54 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42264861 |
aagcagagacaagcaaaagtcacgtttaacagggctacacaag |
42264819 |
T |
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