View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9612_low_66 (Length: 263)
Name: NF9612_low_66
Description: NF9612
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9612_low_66 |
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Alignment Details
Target: chr2 (Bit Score: 175; Significance: 3e-94; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 16 - 251
Target Start/End: Original strand, 7413338 - 7413572
Alignment:
| Q |
16 |
atactaaataaactaatcatagttaa-gtgaaactcttgattgatgtgaagttaaatatannnnnnngagcaaaatgtgaggttagatattgttgcttag |
114 |
Q |
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| T |
7413338 |
atactaaataaactaatcatagttaaagtgaaactcttgattgatgtgaagttaaatatatttttt-gagcaaaatgtgaggttagatattgttgcttag |
7413436 |
T |
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| Q |
115 |
agttatgataaacaaggttcttttaatataaaaattgacaacgttgcaatttaaataaggaaaatgttaaaagatattccttggtatcggttaagaaaac |
214 |
Q |
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| T |
7413437 |
agttatgataaacaaggt-cttttaatataaaaattgacaacgttgcattttaaataaggaaaatgttaaaaggtatttcttggtatcggttaagaaaac |
7413535 |
T |
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| Q |
215 |
aaatatagtactttattgcattgggaattatgtaatc |
251 |
Q |
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| T |
7413536 |
aaatacagtattttattgcattgggaattatgtaatc |
7413572 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 83 - 154
Target Start/End: Complemental strand, 7379286 - 7379216
Alignment:
| Q |
83 |
agcaaaatgtgaggttagatattgttgcttagagttatgataaacaaggttcttttaatataaaaattgaca |
154 |
Q |
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| T |
7379286 |
agcaaaatgtgaggttagatattgttgcttagagttatggtaaacaagg-tcttttaacacaaaaattgaca |
7379216 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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