View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9612_low_78 (Length: 239)
Name: NF9612_low_78
Description: NF9612
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9612_low_78 |
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| [»] scaffold0289 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 182; Significance: 2e-98; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 3817927 - 3818153
Alignment:
| Q |
1 |
atgcattgtcatgcgtaacacggtcaactgtatc----atgtattatggaacggatgtactacctcatatcttgagttacacacaaccatcatcgaaaca |
96 |
Q |
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||||||||||||||||||||||||||||||| || ||||||| ||| | ||| |||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
3817927 |
atgcattgtcatgcgtaacacggtcaactgtgtctgtcatgtattgtgggaaggaggtactacctcatatcttgagttacacacaaccatcatcaaaaca |
3818026 |
T |
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| Q |
97 |
ttatttttcatgtaaacattactatcaatttaatcctttaaattattactccatcactagacagttagactgtaccatgagcattcgtactcaaagctgc |
196 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
3818027 |
ttatttttcatgtaaacattactatcaatttaatcctttaaattattactccatcactagacagttagactgtaccatgagcatacgtactcaaagctgc |
3818126 |
T |
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| Q |
197 |
aactacacacgactcgtgtgacacaag |
223 |
Q |
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||||||||||||||||||||||||||| |
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| T |
3818127 |
aactacacacgactcgtgtgacacaag |
3818153 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 47339939 - 47339716
Alignment:
| Q |
1 |
atgcattgtcatgcgtaacacggtcaactgtatc----atgtattatggaacggatgtactacctcatatcttgagttacacacaaccatcatcgaaaca |
96 |
Q |
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||||||||||||||||||||||||||||||| || ||||||| ||| ||| | |||||||||||| |||||||||||||| ||||||||| ||||| |
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| T |
47339939 |
atgcattgtcatgcgtaacacggtcaactgtgtctgtcatgtattgtgggacgaaggtactacctcat--cttgagttacacaccaccatcatcaaaaca |
47339842 |
T |
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| Q |
97 |
ttatttttcatgtaaacattactatcaatttaatcctttaaattattactccatcactagacagttagactgtaccatgagcattcgtactcaaagctgc |
196 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||| |
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| T |
47339841 |
ttatttttcatgtaaacattactatcaatttaatcctttaaattattactccatcactagacagttagactgtaccatgagcgtacgtactcaaagctgc |
47339742 |
T |
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| Q |
197 |
aactacacacgactcgtgtgacacaa |
222 |
Q |
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|||||||||||||||||||||||||| |
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| T |
47339741 |
aactacacacgactcgtgtgacacaa |
47339716 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 23338010 - 23338054
Alignment:
| Q |
1 |
atgcattgtcatgcgtaacacggtcaactgtatcatgtattatgg |
45 |
Q |
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| T |
23338010 |
atgcattgacatgcgtaatatggtcaactgtatcatgtattatgg |
23338054 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 27302066 - 27302116
Alignment:
| Q |
1 |
atgcattgtcatgcgtaacacggtcaactgtatcatgtattatggaacgga |
51 |
Q |
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|||||||| ||||||||| | |||||| ||||||||||||||||| ||||| |
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| T |
27302066 |
atgcattgacatgcgtaatagggtcaattgtatcatgtattatgggacgga |
27302116 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 44871535 - 44871587
Alignment:
| Q |
1 |
atgcattgtcatgcgtaacacggtcaactgtatcatgtattatggaacggatg |
53 |
Q |
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|||||||| |||| ||| | ||||||||| |||||||||||||||||||||| |
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| T |
44871535 |
atgcattgacatgtataatagggtcaactgcatcatgtattatggaacggatg |
44871587 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 1981240 - 1981190
Alignment:
| Q |
1 |
atgcattgtcatgcgtaacacggtcaactgtatcatgtattatggaacgga |
51 |
Q |
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|||||||| ||||||||| | |||||||| ||||||||||||||| ||||| |
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| T |
1981240 |
atgcattgacatgcgtaagagggtcaactttatcatgtattatgggacgga |
1981190 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0289 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0289
Description:
Target: scaffold0289; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 11 - 51
Target Start/End: Original strand, 9337 - 9377
Alignment:
| Q |
11 |
atgcgtaacacggtcaactgtatcatgtattatggaacgga |
51 |
Q |
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|||||||| | |||||||||||||| ||||||||||||||| |
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| T |
9337 |
atgcgtaataaggtcaactgtatcaagtattatggaacgga |
9377 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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