View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9612_low_79 (Length: 239)
Name: NF9612_low_79
Description: NF9612
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9612_low_79 |
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Alignment Details
Target: chr4 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 29177505 - 29177727
Alignment:
| Q |
1 |
tttgaaggcacagattacaagttatcactgtcttttcctaatgattacccttttaaggctcccaaagtcaagtttgaaactacctgcttccatcccaatg |
100 |
Q |
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| T |
29177505 |
tttgaaggcacagattacaagttatcactgtcttttcctaatgattacccttttaaggctcccaaagtcaagtttgaaactacctgcttccatcccaatg |
29177604 |
T |
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| Q |
101 |
ttgatcttcatggcaacatatgcttggacatacttcaggtaatgtgaaatgatctaaggaggaacattttcatgagcaattgttgttgaccttgttttgg |
200 |
Q |
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| T |
29177605 |
ttgatcttcatggcaacatatgcttggacatacttcaggtaatgtgaaatgatctaaggaggaacattttcctgagcaattgttgttgaccttgttttgg |
29177704 |
T |
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| Q |
201 |
catgccatactgaccttatttgt |
223 |
Q |
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||||||||||||||||||||||| |
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| T |
29177705 |
catgccatactgaccttatttgt |
29177727 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 144
Target Start/End: Complemental strand, 2055676 - 2055533
Alignment:
| Q |
1 |
tttgaaggcacagattacaagttatcactgtcttttcctaatgattacccttttaaggctcccaaagtcaagtttgaaactacctgcttccatcccaatg |
100 |
Q |
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|||||||| ||||| |||| || ||||| || ||||| ||||| || ||||||||||| || || ||||| ||||| || || |||||||| ||||||| |
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| T |
2055676 |
tttgaaggaacagaatacagattgtcactttcatttcccaatgagtatccttttaaggccccaaaggtcaaatttgacaccacatgcttccaccccaatg |
2055577 |
T |
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| Q |
101 |
ttgatcttcatggcaacatatgcttggacatacttcaggtaatg |
144 |
Q |
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| T |
2055576 |
ttgatttgcatggcaatatttgcttggacattcttcaggtaatg |
2055533 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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