View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9612_low_8 (Length: 576)
Name: NF9612_low_8
Description: NF9612
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9612_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 481; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 481; E-Value: 0
Query Start/End: Original strand, 1 - 559
Target Start/End: Complemental strand, 37346407 - 37345859
Alignment:
| Q |
1 |
aatttccatagaacaagcaattgatatccttgtgagctcatattcttcatccgaaagaaaccaagaaattaaaaatgaagtatcagtattgtctatagta |
100 |
Q |
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| T |
37346407 |
aatttccatagaacaagcaattgatatccttgtgagctcatattcttcatccgaaagaaaccaagaaattaaaaatgaagtatcagtattgtctatagta |
37346308 |
T |
|
| Q |
101 |
ttgtctttaaaggtatcctctaaatttgagctaaatttaattattaattgttttagtnnnnnnn-tattgacatgatgaaactttgatgggtgttttagg |
199 |
Q |
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| T |
37346307 |
ttgtctttaaaggtatcctctaaatttgagctaaatttaattattaattgttttagtaaaaataatattgacatgatgaaactttgatgggtgttttagg |
37346208 |
T |
|
| Q |
200 |
ataataattcaacatacaagaaaaaacatgctggcttcctcaatcagtgcttagttcttaccagaagatcttttgtgaacatgtttcgtgatcttggcta |
299 |
Q |
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| T |
37346207 |
ataataattcaacatacaagaaaaaacatgctggcttcctcaatcagtgcttagttcttaccagaagatcttttgtgaacatgtttcgtgatcttggcta |
37346108 |
T |
|
| Q |
300 |
ttattggttacgccttggcatatatattgcattggctataagtttagccaccgtctttaatgatttggataaaagtaatggctcaattcaggtaattaac |
399 |
Q |
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| T |
37346107 |
ttattggttacgccttggcatatatattgcattggctataagtttagccactgtctttaatgatttggataaaagtaatggctcaattcaggtaattaac |
37346008 |
T |
|
| Q |
400 |
aataccttatattacattaactgatctaaagtttagctagtatcttctaattttgcatgtcacttttggttttccttttcaggatagaggttcacttctt |
499 |
Q |
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| T |
37346007 |
aataccttatattacattacctgacctaaagtttagctagtatcttctaattttgcatgtcact-----------ttttcaggatagaggttcacttctt |
37345919 |
T |
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| Q |
500 |
atgtttgtgttttcattcctaactttcatgaccattggtggattcccttcttatgtggag |
559 |
Q |
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| T |
37345918 |
atgtttgtgttttcattcctaactttcatgaccattggtggattcccttcttatgtggag |
37345859 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 275 - 393
Target Start/End: Original strand, 37331733 - 37331851
Alignment:
| Q |
275 |
tgaacatgtttcgtgatcttggctattattggttacgccttggcatatatattgcattggctataagtttagccaccgtctttaatgatttggataaaag |
374 |
Q |
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||||||||||||||||||| |||||||||||||||||| | | ||||||| ||||||||||||||||||||| ||| || | ||||||||| || ||| |
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| T |
37331733 |
tgaacatgtttcgtgatctaggctattattggttacgcttagtcatatatgttgcattggctataagtttaggcactgtttactatgatttgggtacaag |
37331832 |
T |
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| Q |
375 |
taatggctcaattcaggta |
393 |
Q |
| |
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| ||| ||||||| ||||| |
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| T |
37331833 |
ttatgactcaattaaggta |
37331851 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 274 - 346
Target Start/End: Complemental strand, 19543802 - 19543730
Alignment:
| Q |
274 |
gtgaacatgtttcgtgatcttggctattattggttacgccttggcatatatattgcattggctataagtttag |
346 |
Q |
| |
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|||||||||||||||||||| |||||||| |||||||| ||||||||||| ||||||||||||||||||||| |
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| T |
19543802 |
gtgaacatgtttcgtgatctaggctattactggttacgttttggcatatatgttgcattggctataagtttag |
19543730 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 277 - 346
Target Start/End: Original strand, 37322776 - 37322845
Alignment:
| Q |
277 |
aacatgtttcgtgatcttggctattattggttacgccttggcatatatattgcattggctataagtttag |
346 |
Q |
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|||||||||||||||| |||||||||||||||||| | | |||||| ||||||||||||||||||||| |
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| T |
37322776 |
aacatgtttcgtgatccaggctattattggttacgcttagtgatatatgttgcattggctataagtttag |
37322845 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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