View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9612_low_84 (Length: 235)
Name: NF9612_low_84
Description: NF9612
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9612_low_84 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 212; Significance: 1e-116; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 38013270 - 38013489
Alignment:
| Q |
1 |
agaaccctactccaaatcaaaaaagaatttggcaaccctagccaactctcttcatgggatccaaacactgactgctgcaacaataaatggaaaggtgtct |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||| |
|
|
| T |
38013270 |
agaaccctactccaaatcaaaaaagaatttggcaaccctagccaactctcttcatgggatccaaacacagactgctgcaacaacaaatggaaaggtgtct |
38013369 |
T |
|
| Q |
101 |
catgcaactcagacacacaaaccaaccgagtagaaaaccttgatctcgagaaccttgacctacctaaacctgttccaattccaccctccatcgctaacct |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38013370 |
catgcaactcagacacacaaaccaaccgagtagaaaaccttgatctcgagaaccttgacctacctaaacctgttccaattccaccctccatcgctaacct |
38013469 |
T |
|
| Q |
201 |
ccctttccttaccttactct |
220 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
38013470 |
ccctttccttaccttactct |
38013489 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 8 - 206
Target Start/End: Complemental strand, 37697804 - 37697615
Alignment:
| Q |
8 |
tactccaaatcaaaaaagaatttggcaaccctagccaactctcttcatgggatcca---aacactgactgctgcaacaataaatggaaaggtgtctcatg |
104 |
Q |
| |
|
||||||||||||||||||||||||||||||| | | |||||||||||||||||||| |||| ||||||||||||| | |||||||| ||||||||||| |
|
|
| T |
37697804 |
tactccaaatcaaaaaagaatttggcaacccaaccaaactctcttcatgggatccaaacaacaatgactgctgcaacgacaaatggaagggtgtctcatg |
37697705 |
T |
|
| Q |
105 |
caactcagacacacaaaccaaccgagtagaaaaccttgatctcgagaaccttgacctacctaaacctgttccaattccaccctccatcgctaacctccct |
204 |
Q |
| |
|
| |||||| ||||||| | ||||||| |||||| |||| |||| ||||||||||||||| |||||||||||||| ||||||||||| |
|
|
| T |
37697704 |
cgactcag------------accgagtcgccaaccttggtctcgacgacctcaacctccctaaacctgttccatttccaccctccatcactaacctccct |
37697617 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 37989553 - 37989634
Alignment:
| Q |
1 |
agaaccctactccaaatcaaaaaagaatttggcaaccctagccaactctcttcatgggatccaaacactgactgctgcaaca |
82 |
Q |
| |
|
||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||| || |||||||| |||| |
|
|
| T |
37989553 |
agaaccctactccaaataaagaaagaatttggcaaccctagccaactctcttcatgggatccaaccatcgactgctgtaaca |
37989634 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 13 - 81
Target Start/End: Original strand, 37993755 - 37993823
Alignment:
| Q |
13 |
caaatcaaaaaagaatttggcaaccctagccaactctcttcatgggatccaaacactgactgctgcaac |
81 |
Q |
| |
|
|||||||||||| ||||||||||||| | | ||||||||||||||||| ||| || |||||||||||| |
|
|
| T |
37993755 |
caaatcaaaaaacaatttggcaacccaaccaaactctcttcatgggattcaactaccgactgctgcaac |
37993823 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 138 - 209
Target Start/End: Original strand, 37993874 - 37993945
Alignment:
| Q |
138 |
ccttgatctcgagaaccttgacctacctaaacctgttccaattccaccctccatcgctaacctccctttcct |
209 |
Q |
| |
|
|||||||||| || |||| ||||| ||| | ||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
37993874 |
ccttgatctccaggacctcgaccttcctcaccctgttccaattccaccctccatattcaacctccctttcct |
37993945 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University