View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9612_low_90 (Length: 217)
Name: NF9612_low_90
Description: NF9612
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9612_low_90 |
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Alignment Details
Target: chr3 (Bit Score: 135; Significance: 2e-70; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 61 - 199
Target Start/End: Original strand, 42518924 - 42519062
Alignment:
| Q |
61 |
tatttttaatccaagtgtttattcattaaaaattaaccacataatatttttacctggttagcacatcctattccaaaaccaagcaacatgcggccaacat |
160 |
Q |
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| T |
42518924 |
tatttttaatctaagtgtttattcattaaaaattaaccacataatatttttacctggttagcacatcctattccaaaaccaagcaacatgcggccaacat |
42519023 |
T |
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| Q |
161 |
aaagcatccacactttttcagcgaatccattcatggcag |
199 |
Q |
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| T |
42519024 |
aaagcatccacactttttcagcgaatccattcatggcag |
42519062 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 66 - 199
Target Start/End: Original strand, 1240709 - 1240841
Alignment:
| Q |
66 |
ttaatccaagtgtttattcattaaaaattaaccacataatatttttacctggttagcacatcctattccaaaaccaagcaacatgcggccaacataaagc |
165 |
Q |
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|||||| ||| ||||||||||||| |||| ||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1240709 |
ttaatctaagagtttattcattaagaattgaccacatgtt-tttttacctggttagcacatcctattccaaaaccaagcaacatgcggccaacataaagc |
1240807 |
T |
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| Q |
166 |
atccacactttttcagcgaatccattcatggcag |
199 |
Q |
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| T |
1240808 |
atccacactttttcagcgaatccattcatagcag |
1240841 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 102; Significance: 8e-51; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 66 - 199
Target Start/End: Original strand, 41972342 - 41972474
Alignment:
| Q |
66 |
ttaatccaagtgtttattcattaaaaattaaccacataatatttttacctggttagcacatcctattccaaaaccaagcaacatgcggccaacataaagc |
165 |
Q |
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|||||| ||| ||||||||||||| |||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41972342 |
ttaatctaagagtttattcattaagaattaaccacatgtt-tttttacctggttagcacatcctattccaaaaccaagcaacatgcggccaacataaagc |
41972440 |
T |
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| Q |
166 |
atccacactttttcagcgaatccattcatggcag |
199 |
Q |
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| T |
41972441 |
atccacactttttcagcgaatccattcatagcag |
41972474 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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