View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9612_low_91 (Length: 215)
Name: NF9612_low_91
Description: NF9612
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9612_low_91 |
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Alignment Details
Target: chr2 (Bit Score: 204; Significance: 1e-111; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 204
Target Start/End: Complemental strand, 1674765 - 1674562
Alignment:
| Q |
1 |
tgattatcaaaacatgtcttcaatcaaaagtgtcagtgctacatatagatctcgattatcataaaagagagaaaagcatttgtacatacacgaatgaaat |
100 |
Q |
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| T |
1674765 |
tgattatcaaaacatgtcttcaatcaaaagtgtcagtgctacatatagatctcgattatcataaaagagagaaaagcatttgtacatacacgaatgaaat |
1674666 |
T |
|
| Q |
101 |
cttcaaggaaccaagaaggcacagccctagcaggcctaacaaaagacaacctcatcaattccctaagcctatcaggagtttgtggcaacaaaatactaca |
200 |
Q |
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| T |
1674665 |
cttcaaggaaccaagaaggcacagccctagcaggcctaacaaaagacaacctcatcaattccctaagcctatcaggagtttgtggcaacaaaatactaca |
1674566 |
T |
|
| Q |
201 |
agct |
204 |
Q |
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|||| |
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| T |
1674565 |
agct |
1674562 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 11 - 61
Target Start/End: Complemental strand, 1674807 - 1674757
Alignment:
| Q |
11 |
aacatgtcttcaatcaaaagtgtcagtgctacatatagatctcgattatca |
61 |
Q |
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|||| |||| |||||| ||||||||||||||||||||||||| |||||||| |
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| T |
1674807 |
aacacgtctccaatcagaagtgtcagtgctacatatagatcttgattatca |
1674757 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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