View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9613_low_11 (Length: 287)
Name: NF9613_low_11
Description: NF9613
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9613_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 113; Significance: 3e-57; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 119 - 278
Target Start/End: Original strand, 32169494 - 32169650
Alignment:
| Q |
119 |
tttcttaatttagaatctttaaagagtcttatgagacactcgttgtcaagacccaactttattataactgaacaacaatacaaataacaccgactggact |
218 |
Q |
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| T |
32169494 |
tttcttattttagaatct--aaagagtattatgagacactcgttatcaagacctaa-tttattataagtgaacaacaatacatataacaccgactggact |
32169590 |
T |
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| Q |
219 |
ggtcaatggttgttggagttttaattaaatcattttcaaacattattcctgtagtataat |
278 |
Q |
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| T |
32169591 |
ggtcaatggttgttggagttttaattaaatcattttcaaacattattgctgtagtataat |
32169650 |
T |
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Target: chr1; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 18 - 95
Target Start/End: Original strand, 32169384 - 32169467
Alignment:
| Q |
18 |
gtactatacacagctcagccgcctccaagac------tggtaacattgtataaaagtttgtgtaaagtatattaaaaattaaaa |
95 |
Q |
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| T |
32169384 |
gtactatacacagctcagccgcctccaagactttaaatgataacattgtataaaagtttatgtaaagtgtattgaaaattaaaa |
32169467 |
T |
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