View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9613_low_12 (Length: 283)

Name: NF9613_low_12
Description: NF9613
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9613_low_12
NF9613_low_12
[»] chr4 (8 HSPs)
chr4 (19-259)||(50968206-50968446)
chr4 (145-223)||(6067669-6067747)
chr4 (146-219)||(34505290-34505363)
chr4 (145-223)||(31553694-31553772)
chr4 (146-220)||(4690134-4690208)
chr4 (145-219)||(33871041-33871115)
chr4 (146-219)||(52818059-52818132)
chr4 (145-192)||(6071145-6071192)
[»] chr8 (7 HSPs)
chr8 (142-223)||(40866295-40866376)
chr8 (145-223)||(7895149-7895227)
chr8 (146-222)||(44415934-44416010)
chr8 (141-223)||(42014301-42014383)
chr8 (145-219)||(24864608-24864682)
chr8 (145-219)||(38085946-38086020)
chr8 (147-220)||(9963285-9963358)
[»] chr6 (7 HSPs)
chr6 (145-223)||(3992803-3992881)
chr6 (145-223)||(7432416-7432494)
chr6 (145-223)||(7441933-7442011)
chr6 (145-223)||(7425621-7425699)
chr6 (147-220)||(7432982-7433055)
chr6 (145-223)||(7418530-7418608)
chr6 (145-192)||(7414612-7414659)
[»] chr3 (9 HSPs)
chr3 (145-219)||(29618312-29618386)
chr3 (141-219)||(41552096-41552174)
chr3 (145-219)||(11580203-11580277)
chr3 (147-219)||(1488013-1488085)
chr3 (147-219)||(2031252-2031324)
chr3 (147-219)||(35679472-35679544)
chr3 (145-219)||(35687869-35687943)
chr3 (145-199)||(52638676-52638730)
chr3 (145-192)||(35692217-35692264)
[»] chr2 (11 HSPs)
chr2 (141-220)||(3197563-3197642)
chr2 (138-223)||(34643000-34643085)
chr2 (139-219)||(39082462-39082542)
chr2 (144-219)||(24359790-24359865)
chr2 (145-219)||(4713110-4713184)
chr2 (145-223)||(8884447-8884525)
chr2 (145-220)||(36772397-36772472)
chr2 (145-220)||(36793511-36793586)
chr2 (145-220)||(37559326-37559401)
chr2 (145-219)||(42968150-42968224)
chr2 (145-219)||(36756170-36756244)
[»] chr7 (6 HSPs)
chr7 (143-220)||(37022194-37022271)
chr7 (145-225)||(30034301-30034381)
chr7 (143-223)||(46075148-46075228)
chr7 (141-219)||(25287956-25288034)
chr7 (147-223)||(46972135-46972211)
chr7 (141-219)||(34984430-34984508)
[»] chr1 (10 HSPs)
chr1 (140-221)||(23058051-23058132)
chr1 (144-223)||(30340907-30340986)
chr1 (147-221)||(23057679-23057753)
chr1 (147-221)||(23061980-23062054)
chr1 (143-219)||(37369512-37369588)
chr1 (147-221)||(23057864-23057938)
chr1 (141-223)||(30320741-30320823)
chr1 (152-202)||(23057571-23057621)
chr1 (152-202)||(23061872-23061922)
chr1 (147-220)||(43065996-43066074)
[»] chr5 (1 HSPs)
chr5 (145-220)||(2626071-2626146)


Alignment Details
Target: chr4 (Bit Score: 221; Significance: 1e-121; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 19 - 259
Target Start/End: Complemental strand, 50968446 - 50968206
Alignment:
Q  19 tacaaaacatttatcaatcccagtatggtgtttatttccgaagcaaaacgaacggctacgtgcaaccatgctatccggtttttctataacataatatttt 118  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  50968446 tacaaaacatttatcaatcccagtatggtgtttatttccgaagcaaaacgaacggctatgtgcaaccatgctatccggtttttctataacataatatttt 50968347  T
Q  119 attgatcaagagaatgtaatttcaacatggggatgtagctcaaatggtagagcgctcgctttgcatgcgagaggcacggggttcaatcccccgcatctcc 218  Q
    | |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  50968346 aatgatcaagaggatgtaatttcaacatggggatgtagctcaaatggtagagcgctcgctttgcatgcgagaggcacggggttcgatcccccgcatctcc 50968247  T
Q  219 attttataatttcaaatattccttttttcgcttattacata 259  Q
    ||||| |||||||||||||||||||||||||||||||||||    
T  50968246 attttttaatttcaaatattccttttttcgcttattacata 50968206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 145 - 223
Target Start/End: Original strand, 6067669 - 6067747
Alignment:
Q  145 atggggatgtagctcaaatggtagagcgctcgctttgcatgcgagaggcacggggttcaatcccccgcatctccatttt 223  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| || |||||| || ||| |||||||||||||    
T  6067669 atggggatgtagctcaaatggtagagcgctcgctttgcatgcgagaggtacagggttcgataccctgcatctccatttt 6067747  T

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Target: chr4; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 146 - 219
Target Start/End: Original strand, 34505290 - 34505363
Alignment:
Q  146 tggggatgtagctcaaatggtagagcgctcgctttgcatgcgagaggcacggggttcaatcccccgcatctcca 219  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| || |||||| |||||| |||||||||    
T  34505290 tggggatgtagctcaaatggtagagcgctcgctttgcatgcgagaggtacagggttcgatcccctgcatctcca 34505363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 145 - 223
Target Start/End: Original strand, 31553694 - 31553772
Alignment:
Q  145 atggggatgtagctcaaatggtagagcgctcgctttgcatgcgagaggcacggggttcaatcccccgcatctccatttt 223  Q
    |||||||||||||||| |||||||||||||||||| |||||||||||| |||||| || || |||||||||||||||||    
T  31553694 atggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtacggggatcgataccccgcatctccatttt 31553772  T

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Target: chr4; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 146 - 220
Target Start/End: Complemental strand, 4690208 - 4690134
Alignment:
Q  146 tggggatgtagctcaaatggtagagcgctcgctttgcatgcgagaggcacggggttcaatcccccgcatctccat 220  Q
    ||||||||||||||| |||||||||||||||||| |||||||||||| |||||| || || ||||||||||||||    
T  4690208 tggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtacggggatcgataccccgcatctccat 4690134  T

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Target: chr4; HSP #6
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 145 - 219
Target Start/End: Complemental strand, 33871115 - 33871041
Alignment:
Q  145 atggggatgtagctcaaatggtagagcgctcgctttgcatgcgagaggcacggggttcaatcccccgcatctcca 219  Q
    |||||||||||||||| |||||||||||||||||| |||||||||||| |||||| || || |||||||||||||    
T  33871115 atggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtacggggatcgataccccgcatctcca 33871041  T

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Target: chr4; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 146 - 219
Target Start/End: Original strand, 52818059 - 52818132
Alignment:
Q  146 tggggatgtagctcaaatggtagagcgctcgctttgcatgcgagaggcacggggttcaatcccccgcatctcca 219  Q
    |||||||||||||||||||||||||||| ||||||||||||| |||| || |||||| || ||| |||||||||    
T  52818059 tggggatgtagctcaaatggtagagcgcccgctttgcatgcgggaggtacagggttcgataccctgcatctcca 52818132  T

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Target: chr4; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 145 - 192
Target Start/End: Original strand, 6071145 - 6071192
Alignment:
Q  145 atggggatgtagctcaaatggtagagcgctcgctttgcatgcgagagg 192  Q
    |||||||||||||||||||||||||||||| ||||||||||| |||||    
T  6071145 atggggatgtagctcaaatggtagagcgcttgctttgcatgcaagagg 6071192  T

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Target: chr8 (Bit Score: 78; Significance: 2e-36; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 142 - 223
Target Start/End: Complemental strand, 40866376 - 40866295
Alignment:
Q  142 aacatggggatgtagctcaaatggtagagcgctcgctttgcatgcgagaggcacggggttcaatcccccgcatctccatttt 223  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  40866376 aacatggggatgtagctcaaatggtagagcgctcgctttgcatgcgagaggcacggggttcgatcccccgcatctccatttt 40866295  T

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Target: chr8; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 145 - 223
Target Start/End: Complemental strand, 7895227 - 7895149
Alignment:
Q  145 atggggatgtagctcaaatggtagagcgctcgctttgcatgcgagaggcacggggttcaatcccccgcatctccatttt 223  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||| || |||||||||||||||||    
T  7895227 atggggatgtagctcacatggtagagcgctcgctttgcatgcgagaggtacggggttcgataccccgcatctccatttt 7895149  T

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Target: chr8; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 146 - 222
Target Start/End: Original strand, 44415934 - 44416010
Alignment:
Q  146 tggggatgtagctcaaatggtagagcgctcgctttgcatgcgagaggcacggggttcaatcccccgcatctccattt 222  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||| || ||||||||||||||||    
T  44415934 tggggatgtagctcacatggtagagcgctcgctttgcatgcgagaggtacggggttcgataccccgcatctccattt 44416010  T

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Target: chr8; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 141 - 223
Target Start/End: Original strand, 42014301 - 42014383
Alignment:
Q  141 caacatggggatgtagctcaaatggtagagcgctcgctttgcatgcgagaggcacggggttcaatcccccgcatctccatttt 223  Q
    |||| ||||| ||||||||| |||||||||||||||||| |||||||||||||||||||||| || ||||||| |||||||||    
T  42014301 caacttgggggtgtagctcatatggtagagcgctcgcttcgcatgcgagaggcacggggttcgattccccgcacctccatttt 42014383  T

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Target: chr8; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 145 - 219
Target Start/End: Original strand, 24864608 - 24864682
Alignment:
Q  145 atggggatgtagctcaaatggtagagcgctcgctttgcatgcgagaggcacggggttcaatcccccgcatctcca 219  Q
    |||||||||||||||| |||||||||||||||||| |||||||||||| |||||| || || |||||||||||||    
T  24864608 atggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtacggggatcgataccccgcatctcca 24864682  T

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Target: chr8; HSP #6
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 145 - 219
Target Start/End: Original strand, 38085946 - 38086020
Alignment:
Q  145 atggggatgtagctcaaatggtagagcgctcgctttgcatgcgagaggcacggggttcaatcccccgcatctcca 219  Q
    |||||||||||||||| |||||||||||||||||| |||||||||||| |||||| || || |||||||||||||    
T  38085946 atggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtacggggatcgataccccgcatctcca 38086020  T

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Target: chr8; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 147 - 220
Target Start/End: Complemental strand, 9963358 - 9963285
Alignment:
Q  147 ggggatgtagctcaaatggtagagcgctcgctttgcatgcgagaggcacggggttcaatcccccgcatctccat 220  Q
    |||| ||||||||| |||||||||||||||||| |||||||||||||||||||||| || ||||||| ||||||    
T  9963358 gggggtgtagctcatatggtagagcgctcgcttcgcatgcgagaggcacggggttcgattccccgcacctccat 9963285  T

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Target: chr6 (Bit Score: 75; Significance: 1e-34; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 145 - 223
Target Start/End: Complemental strand, 3992881 - 3992803
Alignment:
Q  145 atggggatgtagctcaaatggtagagcgctcgctttgcatgcgagaggcacggggttcaatcccccgcatctccatttt 223  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  3992881 atggggatgtagctcaaatggtagagcgctcgctttgcatgcgagaggcacggggttcgatcccccgcatctccatttt 3992803  T

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Target: chr6; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 145 - 223
Target Start/End: Complemental strand, 7432494 - 7432416
Alignment:
Q  145 atggggatgtagctcaaatggtagagcgctcgctttgcatgcgagaggcacggggttcaatcccccgcatctccatttt 223  Q
    |||||||||||||||| |||||||||||||||||| |||||||||||| |||||| || || |||||||||||||||||    
T  7432494 atggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtacggggatcgataccccgcatctccatttt 7432416  T

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Target: chr6; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 145 - 223
Target Start/End: Complemental strand, 7442011 - 7441933
Alignment:
Q  145 atggggatgtagctcaaatggtagagcgctcgctttgcatgcgagaggcacggggttcaatcccccgcatctccatttt 223  Q
    |||||||||||||||| |||||||||||||||||| |||||||||||| |||||| || || ||||||| |||||||||    
T  7442011 atggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtacggggatcgataccccgcaactccatttt 7441933  T

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Target: chr6; HSP #4
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 145 - 223
Target Start/End: Complemental strand, 7425699 - 7425621
Alignment:
Q  145 atggggatgtagctcaaatggtagagcgctcgctttgcatgcgagaggcacggggttcaatcccccgcatctccatttt 223  Q
    |||||||||||||||| |||||||||||||||||| ||||| |||||| |||||| |  || |||||||||||||||||    
T  7425699 atggggatgtagctcagatggtagagcgctcgcttagcatgtgagaggtacggggattgataccccgcatctccatttt 7425621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 147 - 220
Target Start/End: Complemental strand, 7433055 - 7432982
Alignment:
Q  147 ggggatgtagctcaaatggtagagcgctcgctttgcatgcgagaggcacggggttcaatcccccgcatctccat 220  Q
    |||||||||||||| |||||||||||||||||| |||||| ||||| |||||| || || ||||||||||||||    
T  7433055 ggggatgtagctcagatggtagagcgctcgcttagcatgcaagaggtacggggatcgataccccgcatctccat 7432982  T

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Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 145 - 223
Target Start/End: Complemental strand, 7418608 - 7418530
Alignment:
Q  145 atggggatgtagctcaaatggtagagcgctcgctttgcatgcgagaggcacggggttcaatcccccgcatctccatttt 223  Q
    |||||||||||||||| |||||| || |||||||| ||||| |||||| |||||| |  || |||| ||||||||||||    
T  7418608 atggggatgtagctcagatggtatagtgctcgcttagcatgtgagagggacggggattgataccccacatctccatttt 7418530  T

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Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 145 - 192
Target Start/End: Complemental strand, 7414659 - 7414612
Alignment:
Q  145 atggggatgtagctcaaatggtagagcgctcgctttgcatgcgagagg 192  Q
    |||||||||||||| | |||||||||||||||||| ||||| ||||||    
T  7414659 atggggatgtagcttagatggtagagcgctcgcttagcatgtgagagg 7414612  T

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Target: chr3 (Bit Score: 71; Significance: 3e-32; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 145 - 219
Target Start/End: Original strand, 29618312 - 29618386
Alignment:
Q  145 atggggatgtagctcaaatggtagagcgctcgctttgcatgcgagaggcacggggttcaatcccccgcatctcca 219  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  29618312 atggggatgtagctcaaatggtagagcgctcgctttgcatgcgagaggcacggggttcgatcccccgcatctcca 29618386  T

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Target: chr3; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 141 - 219
Target Start/End: Original strand, 41552096 - 41552174
Alignment:
Q  141 caacatggggatgtagctcaaatggtagagcgctcgctttgcatgcgagaggcacggggttcaatcccccgcatctcca 219  Q
    |||||||||| ||||||||| |||||||||||||||||| |||||||||||||||||||||| || ||||||| |||||    
T  41552096 caacatggggttgtagctcatatggtagagcgctcgcttcgcatgcgagaggcacggggttcgattccccgcagctcca 41552174  T

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Target: chr3; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 145 - 219
Target Start/End: Original strand, 11580203 - 11580277
Alignment:
Q  145 atggggatgtagctcaaatggtagagcgctcgctttgcatgcgagaggcacggggttcaatcccccgcatctcca 219  Q
    |||||||||||||||| |||||||||||||||||| |||||||||||| |||||| || || |||||||||||||    
T  11580203 atggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtacggggatcgataccccgcatctcca 11580277  T

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Target: chr3; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 147 - 219
Target Start/End: Original strand, 1488013 - 1488085
Alignment:
Q  147 ggggatgtagctcaaatggtagagcgctcgctttgcatgcgagaggcacggggttcaatcccccgcatctcca 219  Q
    |||| ||||||||| |||||||||||||||||| |||||||||||||||||||||| || ||||||| |||||    
T  1488013 gggggtgtagctcatatggtagagcgctcgcttcgcatgcgagaggcacggggttcgattccccgcacctcca 1488085  T

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Target: chr3; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 147 - 219
Target Start/End: Original strand, 2031252 - 2031324
Alignment:
Q  147 ggggatgtagctcaaatggtagagcgctcgctttgcatgcgagaggcacggggttcaatcccccgcatctcca 219  Q
    |||| ||||||||| |||||||||||||||||| |||||||||||||||||||||| || ||||||| |||||    
T  2031252 gggggtgtagctcatatggtagagcgctcgcttcgcatgcgagaggcacggggttcgattccccgcacctcca 2031324  T

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Target: chr3; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 147 - 219
Target Start/End: Original strand, 35679472 - 35679544
Alignment:
Q  147 ggggatgtagctcaaatggtagagcgctcgctttgcatgcgagaggcacggggttcaatcccccgcatctcca 219  Q
    |||||||||||||| |||||||||||||||||| |||||||||||| |||||| || || |||||||||||||    
T  35679472 ggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtacggggatcgataccccgcatctcca 35679544  T

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Target: chr3; HSP #7
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 145 - 219
Target Start/End: Original strand, 35687869 - 35687943
Alignment:
Q  145 atggggatgtagctcaaatggtagagcgctcgctttgcatgcgagaggcacggggttcaatcccccgcatctcca 219  Q
    |||||||||||||||| |||||||||||||||||| |||||||||||| | |||| || || |||||||||||||    
T  35687869 atggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtatggggatcgataccccgcatctcca 35687943  T

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Target: chr3; HSP #8
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 145 - 199
Target Start/End: Complemental strand, 52638730 - 52638676
Alignment:
Q  145 atggggatgtagctcaaatggtagagcgctcgctttgcatgcgagaggcacgggg 199  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||| ||||||    
T  52638730 atggggatgtagctcaaatggtagagcgctcgcttagcatgcgagaggtacgggg 52638676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 145 - 192
Target Start/End: Original strand, 35692217 - 35692264
Alignment:
Q  145 atggggatgtagctcaaatggtagagcgctcgctttgcatgcgagagg 192  Q
    |||||||||||||||| |||||||||||||||||| ||||||||||||    
T  35692217 atggggatgtagctcagatggtagagcgctcgcttagcatgcgagagg 35692264  T

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Target: chr2 (Bit Score: 68; Significance: 2e-30; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 141 - 220
Target Start/End: Original strand, 3197563 - 3197642
Alignment:
Q  141 caacatggggatgtagctcaaatggtagagcgctcgctttgcatgcgagaggcacggggttcaatcccccgcatctccat 220  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||    
T  3197563 caacctggggatgtagctcaaatggtagagcgctcgctttgcatgcgagaggcacggggtttgatcccccgcatctccat 3197642  T

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Target: chr2; HSP #2
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 138 - 223
Target Start/End: Complemental strand, 34643085 - 34643000
Alignment:
Q  138 tttcaacatggggatgtagctcaaatggtagagcgctcgctttgcatgcgagaggcacggggttcaatcccccgcatctccatttt 223  Q
    ||||||||||||||||||||||| |||||||||||||||||| |||||||||||| |||||| || || |||||||||||||||||    
T  34643085 tttcaacatggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtacggggatcgataccccgcatctccatttt 34643000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 139 - 219
Target Start/End: Original strand, 39082462 - 39082542
Alignment:
Q  139 ttcaacatggggatgtagctcaaatggtagagcgctcgctttgcatgcgagaggcacggggttcaatcccccgcatctcca 219  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||| || |||||| |||||| |||||||||    
T  39082462 ttcatcatggggatgtagctcaaatggtagagcgctcgctttgcatgcgagaggtacagggttcgatcccctgcatctcca 39082542  T

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Target: chr2; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 144 - 219
Target Start/End: Original strand, 24359790 - 24359865
Alignment:
Q  144 catggggatgtagctcaaatggtagagcgctcgctttgcatgcgagaggcacggggttcaatcccccgcatctcca 219  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| || |||||| |||||| |||||||||    
T  24359790 catggggatgtagctcaaatggtagagcgctcgctttgcatgcgagaggtacagggttcgatcccctgcatctcca 24359865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 145 - 219
Target Start/End: Complemental strand, 4713184 - 4713110
Alignment:
Q  145 atggggatgtagctcaaatggtagagcgctcgctttgcatgcgagaggcacggggttcaatcccccgcatctcca 219  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| || |||||| |||||| |||||||||    
T  4713184 atggggatgtagctcaaatggtagagcgctcgctttgcatgcgagaggtacagggttcgatcccctgcatctcca 4713110  T

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Target: chr2; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 145 - 223
Target Start/End: Original strand, 8884447 - 8884525
Alignment:
Q  145 atggggatgtagctcaaatggtagagcgctcgctttgcatgcgagaggcacggggttcaatcccccgcatctccatttt 223  Q
    |||||||||||||||| |||||||||||||||||| |||||||||||| |||||| || || |||||||||||||||||    
T  8884447 atggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtacggggatcgataccccgcatctccatttt 8884525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 145 - 220
Target Start/End: Complemental strand, 36772472 - 36772397
Alignment:
Q  145 atggggatgtagctcaaatggtagagcgctcgctttgcatgcgagaggcacggggttcaatcccccgcatctccat 220  Q
    |||||||||||||||| |||||||||||||||||| |||||||||||| |||||| || || ||||||||||||||    
T  36772472 atggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtacggggatcgataccccgcatctccat 36772397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 145 - 220
Target Start/End: Complemental strand, 36793586 - 36793511
Alignment:
Q  145 atggggatgtagctcaaatggtagagcgctcgctttgcatgcgagaggcacggggttcaatcccccgcatctccat 220  Q
    |||||||||||||||| |||||||||||||||||| |||||||||||| |||||| || || ||||||||||||||    
T  36793586 atggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtacggggatcgataccccgcatctccat 36793511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 145 - 220
Target Start/End: Complemental strand, 37559401 - 37559326
Alignment:
Q  145 atggggatgtagctcaaatggtagagcgctcgctttgcatgcgagaggcacggggttcaatcccccgcatctccat 220  Q
    |||||||||||||||| |||||||||||||||||| |||||||||||| |||||| || || ||||||||||||||    
T  37559401 atggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtacggggatcgataccccgcatctccat 37559326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 145 - 219
Target Start/End: Original strand, 42968150 - 42968224
Alignment:
Q  145 atggggatgtagctcaaatggtagagcgctcgctttgcatgcgagaggcacggggttcaatcccccgcatctcca 219  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||| || |||||| || ||| |||||||||    
T  42968150 atggggatgtagctcaaatggtagagcgcttgctttgcatgcgagaggtacagggttcgataccctgcatctcca 42968224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 145 - 219
Target Start/End: Complemental strand, 36756244 - 36756170
Alignment:
Q  145 atggggatgtagctcaaatggtagagcgctcgctttgcatgcgagaggcacggggttcaatcccccgcatctcca 219  Q
    |||||||||||||||| ||||||||| |||||||| |||||||||||| |||||| || || |||||||||||||    
T  36756244 atggggatgtagctcagatggtagagtgctcgcttagcatgcgagaggtacggggatcgataccccgcatctcca 36756170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 62; Significance: 8e-27; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 143 - 220
Target Start/End: Complemental strand, 37022271 - 37022194
Alignment:
Q  143 acatggggatgtagctcaaatggtagagcgctcgctttgcatgcgagaggcacggggttcaatcccccgcatctccat 220  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||| || ||||||||||||||    
T  37022271 acatggggatgtagctcacatggtagagcgctcgctttgcatgcgagaggtacggggttcgataccccgcatctccat 37022194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 145 - 225
Target Start/End: Original strand, 30034301 - 30034381
Alignment:
Q  145 atggggatgtagctcaaatggtagagcgctcgctttgcatgcgagaggcacggggttcaatcccccgcatctccattttat 225  Q
    |||||||||||||||| |||||||||||||||||| |||||||||||| |||||| || || |||||||||||||||||||    
T  30034301 atggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtacggggatcgataccccgcatctccattttat 30034381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 143 - 223
Target Start/End: Complemental strand, 46075228 - 46075148
Alignment:
Q  143 acatggggatgtagctcaaatggtagagcgctcgctttgcatgcgagaggcacggggttcaatcccccgcatctccatttt 223  Q
    |||||||||||||||||| |||||||||||||||||| |||||||||||| |||||| || || |||||||||||||||||    
T  46075228 acatggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtacggggatcgataccccgcatctccatttt 46075148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 141 - 219
Target Start/End: Original strand, 25287956 - 25288034
Alignment:
Q  141 caacatggggatgtagctcaaatggtagagcgctcgctttgcatgcgagaggcacggggttcaatcccccgcatctcca 219  Q
    |||||||||||||||||||| |||||||||||||||||| |||||||||||| |||||| || || |||||||||||||    
T  25287956 caacatggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtacggggatcgataccccgcatctcca 25288034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 147 - 223
Target Start/End: Complemental strand, 46972211 - 46972135
Alignment:
Q  147 ggggatgtagctcaaatggtagagcgctcgctttgcatgcgagaggcacggggttcaatcccccgcatctccatttt 223  Q
    ||||| |||||||| |||||||||||||||||| |||||||||||||||||||||| || |||||| ||||||||||    
T  46972211 ggggacgtagctcatatggtagagcgctcgcttcgcatgcgagaggcacggggttcgattccccgcgtctccatttt 46972135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 141 - 219
Target Start/End: Complemental strand, 34984508 - 34984430
Alignment:
Q  141 caacatggggatgtagctcaaatggtagagcgctcgctttgcatgcgagaggcacggggttcaatcccccgcatctcca 219  Q
    ||||| |||||||||||||| |||||||||||||||||| |||||||||||| |||||| || || |||||||||||||    
T  34984508 caacaaggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtacggggatcgataccccgcatctcca 34984430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 62; Significance: 8e-27; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 140 - 221
Target Start/End: Complemental strand, 23058132 - 23058051
Alignment:
Q  140 tcaacatggggatgtagctcaaatggtagagcgctcgctttgcatgcgagaggcacggggttcaatcccccgcatctccatt 221  Q
    |||||| |||||||||||||| ||||||||||||||||||||||||||||||| ||||||||| || |||||||||||||||    
T  23058132 tcaacaaggggatgtagctcacatggtagagcgctcgctttgcatgcgagaggtacggggttcgataccccgcatctccatt 23058051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 144 - 223
Target Start/End: Complemental strand, 30340986 - 30340907
Alignment:
Q  144 catggggatgtagctcaaatggtagagcgctcgctttgcatgcgagaggcacggggttcaatcccccgcatctccatttt 223  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| || |||||  |||||| |||||||||||||    
T  30340986 catggggatgtagctcaaatggtagagcgctcgctttgcatgcgagaggtacagggtttgatcccctgcatctccatttt 30340907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 147 - 221
Target Start/End: Complemental strand, 23057753 - 23057679
Alignment:
Q  147 ggggatgtagctcaaatggtagagcgctcgctttgcatgcgagaggcacggggttcaatcccccgcatctccatt 221  Q
    |||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||| ||| |||||||||||    
T  23057753 ggggatgtagctcacatggtagagcgctcgctttgcatgcgagaggtacggggttcaataccctgcatctccatt 23057679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 147 - 221
Target Start/End: Complemental strand, 23062054 - 23061980
Alignment:
Q  147 ggggatgtagctcaaatggtagagcgctcgctttgcatgcgagaggcacggggttcaatcccccgcatctccatt 221  Q
    |||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||| ||| |||||||||||    
T  23062054 ggggatgtagctcacatggtagagcgctcgctttgcatgcgagaggtacggggttcaataccctgcatctccatt 23061980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 143 - 219
Target Start/End: Complemental strand, 37369588 - 37369512
Alignment:
Q  143 acatggggatgtagctcaaatggtagagcgctcgctttgcatgcgagaggcacggggttcaatcccccgcatctcca 219  Q
    |||||||||||||||||| |||||||||||||||||| |||||||||||| |||||| || || |||||||||||||    
T  37369588 acatggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtacggggatcgataccccgcatctcca 37369512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 147 - 221
Target Start/End: Complemental strand, 23057938 - 23057864
Alignment:
Q  147 ggggatgtagctcaaatggtagagcgctcgctttgcatgcgagaggcacggggttcaatcccccgcatctccatt 221  Q
    |||| ||||||||| ||||||||||||||||||||||||||||||| ||||||||| || ||| |||||||||||    
T  23057938 gggggtgtagctcacatggtagagcgctcgctttgcatgcgagaggtacggggttcgataccctgcatctccatt 23057864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 141 - 223
Target Start/End: Complemental strand, 30320823 - 30320741
Alignment:
Q  141 caacatggggatgtagctcaaatggtagagcgctcgctttgcatgcgagaggcacggggttcaatcccccgcatctccatttt 223  Q
    |||| |||||||||||||||||||||||||||| ||||||||||||| |||| || |||||| || ||| |||||||||||||    
T  30320823 caacttggggatgtagctcaaatggtagagcgcccgctttgcatgcgggaggtacagggttcgataccctgcatctccatttt 30320741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 152 - 202
Target Start/End: Complemental strand, 23057621 - 23057571
Alignment:
Q  152 tgtagctcaaatggtagagcgctcgctttgcatgcgagaggcacggggttc 202  Q
    ||||||||| ||||||||||||||||||||||||||||||| | |||||||    
T  23057621 tgtagctcacatggtagagcgctcgctttgcatgcgagaggtatggggttc 23057571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 152 - 202
Target Start/End: Complemental strand, 23061922 - 23061872
Alignment:
Q  152 tgtagctcaaatggtagagcgctcgctttgcatgcgagaggcacggggttc 202  Q
    ||||||||| ||||||||||||||||||||||||||||||| | |||||||    
T  23061922 tgtagctcacatggtagagcgctcgctttgcatgcgagaggtatggggttc 23061872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 147 - 220
Target Start/End: Original strand, 43065996 - 43066074
Alignment:
Q  147 ggggatgtagctcaaatggtagagcgctcgc-----tttgcatgcgagaggcacggggttcaatcccccgcatctccat 220  Q
    |||||||||||||| ||||||||||||||||     || |||||||||||| |||||| || || ||||||||||||||    
T  43065996 ggggatgtagctcatatggtagagcgctcgcatcacttagcatgcgagaggtacggggctcgataccccgcatctccat 43066074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 52; Significance: 7e-21; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 145 - 220
Target Start/End: Complemental strand, 2626146 - 2626071
Alignment:
Q  145 atggggatgtagctcaaatggtagagcgctcgctttgcatgcgagaggcacggggttcaatcccccgcatctccat 220  Q
    |||||||||||||||| |||||||||||||||||| |||||||||||| |||||| || || ||||||||||||||    
T  2626146 atggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtacggggatcgataccccgcatctccat 2626071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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