View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9613_low_14 (Length: 253)

Name: NF9613_low_14
Description: NF9613
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9613_low_14
NF9613_low_14
[»] chr5 (11 HSPs)
chr5 (3-238)||(13884027-13884261)
chr5 (1-213)||(16024714-16024926)
chr5 (140-238)||(13871875-13871973)
chr5 (48-227)||(13882268-13882442)
chr5 (108-182)||(40165856-40165930)
chr5 (134-228)||(14397343-14397437)
chr5 (98-238)||(13878642-13878786)
chr5 (131-198)||(14391089-14391156)
chr5 (131-198)||(14392833-14392900)
chr5 (87-182)||(13139181-13139269)
chr5 (1-29)||(13882232-13882260)
[»] chr8 (2 HSPs)
chr8 (67-174)||(26202313-26202420)
chr8 (67-174)||(29625515-29625622)


Alignment Details
Target: chr5 (Bit Score: 120; Significance: 2e-61; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 3 - 238
Target Start/End: Original strand, 13884027 - 13884261
Alignment:
Q  3 gcttcaccacaaacttcttccccaggtctattttgatgtagctgattcacaccaccagccttttctttatgcactggatccaaaccagcatctccataaa 102  Q
    |||||||||||| |||||||||||||||||||||||| | |  ||||||||| | || ||||||||||| |||||| |||||||||||||||||||||||    
T  13884027 gcttcaccacaagcttcttccccaggtctattttgatattgtcgattcacactatcatccttttctttaagcactgcatccaaaccagcatctccataaa 13884126  T
Q  103 ctgcaaaattgtcctcttcaaagtttccatttggagataactcaccctcttctctttcacttttgaactgtcgatttgataattcttggtatatgcaaat 202  Q
    ||| ||||||  ||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||| | |||  |||||||||| ||| ||     
T  13884127 ctgaaaaattaacctcttcaaagtttccatttggagataactcacactcttctcttttacttttgaactgtcga-tcgattcttcttggtatctgctaac 13884225  T
Q  203 tgcagtgcctctagtgatggtcccatctgtgaatgt 238  Q
    | ||||||||| ||  |||| ||||| |||||||||    
T  13884226 ttcagtgcctccagcaatggccccatttgtgaatgt 13884261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 1 - 213
Target Start/End: Original strand, 16024714 - 16024926
Alignment:
Q  1 tggcttcaccacaaacttcttccccaggtctattttgatgtagctgattcacaccaccagccttttctttatgcactggatccaaaccagcatctccata 100  Q
    |||||||||||||||||||||| ||| |||||||||||| | || | |||| ||||||| | ||| ||||||||||||  ||| ||||||||||||||||    
T  16024714 tggcttcaccacaaacttcttcgccacgtctattttgatattgccgtttcaaaccaccatcatttcctttatgcactgcctccgaaccagcatctccata 16024813  T
Q  101 aactgcaaaattgtcctcttcaaagtttccatttggagataactcaccctcttctctttcacttttgaactgtcgatttgataattcttggtatatgcaa 200  Q
    |||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||| |||| |||   ||||||||| ||||     
T  16024814 aactgcaaaattatcctcttcaaagtctccatttggagataactcaccctcttctctttcgcttttgaactgtggattcgattcctcttggtatctgcac 16024913  T
Q  201 attgcagtgcctc 213  Q
    | | |||||||||    
T  16024914 acttcagtgcctc 16024926  T

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Target: chr5; HSP #3
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 140 - 238
Target Start/End: Original strand, 13871875 - 13871973
Alignment:
Q  140 taactcaccctcttctctttcacttttgaactgtcgatttgataattcttggtatatgcaaattgcagtgcctctagtgatggtcccatctgtgaatgt 238  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13871875 taactcaccctcttctctttcacttttgaactgtcgatttgataattcttggtatatgcaaattgcagtgcctctagtgatggtcccatctgtgaatgt 13871973  T

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Target: chr5; HSP #4
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 48 - 227
Target Start/End: Original strand, 13882268 - 13882442
Alignment:
Q  48 ttcacaccaccagccttttctttatgcactggatccaaaccagcatctccataaactgcaaaattgtcctcttcaaagtttccatttggagataactcac 147  Q
    |||||||||||| | |||||||||||     ||||||||||||||| ||||||||||| |||| | |||||||||||||||||||||  ||||||||| |    
T  13882268 ttcacaccaccatctttttctttatg-----gatccaaaccagcatttccataaactgaaaaactatcctcttcaaagtttccatttcaagataactctc 13882362  T
Q  148 cctcttctctttcacttttgaactgtcgatttgataattcttggtatatgcaaattgcagtgcctctagtgatggtccca 227  Q
    ||||||||||||  |||||||||||| ||||||||  |||||||||| |||||| | ||||||||| || ||||| ||||    
T  13882363 cctcttctctttggcttttgaactgttgatttgattcttcttggtatctgcaaacttcagtgcctccagcgatggcccca 13882442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 108 - 182
Target Start/End: Complemental strand, 40165930 - 40165856
Alignment:
Q  108 aaattgtcctcttcaaagtttccatttggagataactcaccctcttctctttcacttttgaactgtcgatttgat 182  Q
    ||||| ||||||||||||| ||| |||||||||||||||||||||||| |||| |||||||||||||||||||||    
T  40165930 aaattatcctcttcaaagtctccgtttggagataactcaccctcttctttttcgcttttgaactgtcgatttgat 40165856  T

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Target: chr5; HSP #6
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 134 - 228
Target Start/End: Complemental strand, 14397437 - 14397343
Alignment:
Q  134 tggagataactcaccctcttctctttcacttttgaactgtcgatttgataattcttggtatatgcaaattgcagtgcctctagtgatggtcccat 228  Q
    |||||||||| |||||||||||||||| |||||||||| |||||||||| ||||||||||||||| || | || ||| || |||||||| |||||    
T  14397437 tggagataacacaccctcttctctttcgcttttgaactatcgatttgattattcttggtatatgctaacttcaatgcttccagtgatggccccat 14397343  T

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Target: chr5; HSP #7
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 98 - 238
Target Start/End: Original strand, 13878642 - 13878786
Alignment:
Q  98 ataaactgcaaaattgtcctcttcaaagtttccatttggagataactcacc----ctcttctctttcac-ttttgaactgtcgatttgataattcttggt 192  Q
    |||||||||||||||||||| |||||||| |||||||||||||||||||||    |||||||||||  | |||||||||||||| | |||  ||||||||    
T  13878642 ataaactgcaaaattgtcctattcaaagtctccatttggagataactcaccctcgctcttctctttagctttttgaactgtcga-tagattcttcttggt 13878740  T
Q  193 atatgcaaattgcagtgcctctagtgatggtcccatctgtgaatgt 238  Q
    || || ||| | |||| |||| ||  |||||||||| |||||||||    
T  13878741 atttgtaaacttcagtccctccagcaatggtcccatttgtgaatgt 13878786  T

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Target: chr5; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 131 - 198
Target Start/End: Complemental strand, 14391156 - 14391089
Alignment:
Q  131 atttggagataactcaccctcttctctttcacttttgaactgtcgatttgataattcttggtatatgc 198  Q
    ||||||||||||| |||||||||||||||| |||||||||| | |||||||  |||||||||||||||    
T  14391156 atttggagataacacaccctcttctctttcgcttttgaactatggatttgactattcttggtatatgc 14391089  T

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Target: chr5; HSP #9
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 131 - 198
Target Start/End: Complemental strand, 14392900 - 14392833
Alignment:
Q  131 atttggagataactcaccctcttctctttcacttttgaactgtcgatttgataattcttggtatatgc 198  Q
    |||||||||| |||| |||||||||||||  |||||||||| ||||||||||  ||||||||||||||    
T  14392900 atttggagatgactctccctcttctcttttgcttttgaactatcgatttgattcttcttggtatatgc 14392833  T

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Target: chr5; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 87 - 182
Target Start/End: Original strand, 13139181 - 13139269
Alignment:
Q  87 ccagcatctccataaactgcaaaattgtcctcttcaaagtttccatttggagataactcaccctcttctctttcacttttgaactgtcgatttgat 182  Q
    |||| ||||||||||||||||||||| ||||||||||||| ||        |||||||| |||||||||||||  | |||||||||||||||||||    
T  13139181 ccaggatctccataaactgcaaaattatcctcttcaaagtctc-------tgataactcgccctcttctcttttgcctttgaactgtcgatttgat 13139269  T

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Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 13882232 - 13882260
Alignment:
Q  1 tggcttcaccacaaacttcttccccaggt 29  Q
    |||||||||||||||||||||||||||||    
T  13882232 tggcttcaccacaaacttcttccccaggt 13882260  T

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Target: chr8 (Bit Score: 60; Significance: 1e-25; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 67 - 174
Target Start/End: Original strand, 26202313 - 26202420
Alignment:
Q  67 ctttatgcactggatccaaaccagcatctccataaactgcaaaattgtcctcttcaaagtttccatttggagataactcaccctcttctctttcactttt 166  Q
    ||||||||||||  |||| |||||||| | ||||||||||||| || ||||||||||||| |||||| ||||| || |||||||||||||||||||||||    
T  26202313 ctttatgcactgcctccagaccagcatttgcataaactgcaaagttatcctcttcaaagtctccattaggagacaattcaccctcttctctttcactttt 26202412  T
Q  167 gaactgtc 174  Q
    ||| ||||    
T  26202413 gaagtgtc 26202420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 67 - 174
Target Start/End: Original strand, 29625515 - 29625622
Alignment:
Q  67 ctttatgcactggatccaaaccagcatctccataaactgcaaaattgtcctcttcaaagtttccatttggagataactcaccctcttctctttcactttt 166  Q
    ||||||||||||  |||| ||||| || | ||||||||||||| || ||||||||||||| |||||| ||||| || |||||||||||||||||||||||    
T  29625515 ctttatgcactgcctccagaccagaatttgcataaactgcaaagttatcctcttcaaagtctccattaggagacaattcaccctcttctctttcactttt 29625614  T
Q  167 gaactgtc 174  Q
    ||| ||||    
T  29625615 gaagtgtc 29625622  T

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