View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9613_low_18 (Length: 215)
Name: NF9613_low_18
Description: NF9613
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9613_low_18 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 92; Significance: 7e-45; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 92; E-Value: 7e-45
Query Start/End: Original strand, 51 - 215
Target Start/End: Original strand, 34662310 - 34662469
Alignment:
| Q |
51 |
gtgtcatttatatgtccttt-----tacactataaatcaaatattaattttgttttctcattctatccttaattatttattacttacnnnnnnnnnctcc |
145 |
Q |
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| T |
34662310 |
gtgtcatttatatgtcctttaattttacactataaatcaaatattaattttgttttctcattctatccttaattatttattacttac---ttttttctcc |
34662406 |
T |
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| Q |
146 |
caattcttgtattaaattttgttaacattggctttaaagcacttgttattatttgtccttgcagtataat |
215 |
Q |
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| T |
34662407 |
caattcttgtattaaattttgttaacattg-------agcacttgttattatttgtccttgcagtataat |
34662469 |
T |
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