View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9613_low_2 (Length: 583)

Name: NF9613_low_2
Description: NF9613
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9613_low_2
NF9613_low_2
[»] chr6 (5 HSPs)
chr6 (287-567)||(24253901-24254181)
chr6 (91-288)||(24253678-24253875)
chr6 (15-95)||(24253565-24253645)
chr6 (15-95)||(22567426-22567506)
chr6 (92-159)||(22567540-22567607)
[»] chr3 (2 HSPs)
chr3 (324-448)||(20863638-20863762)
chr3 (222-288)||(20863362-20863428)
[»] chr7 (4 HSPs)
chr7 (453-567)||(19325618-19325737)
chr7 (222-288)||(19324417-19324483)
chr7 (318-413)||(19820162-19820257)
chr7 (375-434)||(19324851-19324910)
[»] chr2 (2 HSPs)
chr2 (16-95)||(11389862-11389941)
chr2 (16-95)||(11406523-11406602)
[»] chr5 (5 HSPs)
chr5 (497-567)||(29642665-29642735)
chr5 (309-415)||(29643464-29643570)
chr5 (309-415)||(29648683-29648789)
chr5 (501-567)||(29820890-29820956)
chr5 (354-415)||(29596546-29596607)


Alignment Details
Target: chr6 (Bit Score: 257; Significance: 1e-143; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 287 - 567
Target Start/End: Original strand, 24253901 - 24254181
Alignment:
Q  287 ctagtccaataaaactatatcactttggaaatagaagccatgttatgttttattgatgcaaattttgctgaaatttgctgaaagaattcaaagtttgata 386  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  24253901 ctagtccaataaaactatatcactttggaaatagaagccatgttatgttttattgatgcaaatcttgctgaaatttgctgaaagaattcaaagtttgata 24254000  T
Q  387 gggaattatcaatcaacaaaactttgggggtaaaccatatgatagtaaattaatatatagatttacttaacaatataataagtcaacagcaaaatatact 486  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||  |||||||||||||||||||||||| |||||||||||    
T  24254001 gggaattatcaatcaacaaaactttgggggaaaaccatatgatagtaaattaatatatagatgcacttaacaatataataagtcaacaacaaaatatact 24254100  T
Q  487 tgcaatctattctattactatggaatgacaaagatttcaaaacaacacgcatgaattcaaacaaattagaacaagtaaatc 567  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  24254101 tgcaatctattctattactatggaatgacaaagatttcaaaacaacacgcatgaatccaaacaaattagaacaagtaaatc 24254181  T

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Target: chr6; HSP #2
Raw Score: 182; E-Value: 4e-98
Query Start/End: Original strand, 91 - 288
Target Start/End: Original strand, 24253678 - 24253875
Alignment:
Q  91 atgtgattccagagcaaatgcgaaccttatgagtctaaagaaggtaagcgagttaggaaatctgaaaatgatcccatataacaaaacaattcgatatgct 190  Q
    |||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24253678 atgtgattccggagcaaatgcgaaccttatgagtctaaagaaggcaagcgagttaggaaatctgaaaatgatcccatataacaaaacaattcgatatgct 24253777  T
Q  191 aacggtcgagttgaaatggcaatcggcatactgtattcccatcaaagtcctatattgatgcatgattaggattaattttgttgttgattattactgct 288  Q
    |||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24253778 aacggtcgagttgaaatggcaatcagcatactttattcccatcaaagtcctatattgatgcatgattaggattaattttgttgttgattattactgct 24253875  T

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Target: chr6; HSP #3
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 15 - 95
Target Start/End: Original strand, 24253565 - 24253645
Alignment:
Q  15 cttactgaagagtgtcgcatcaacttcgaggtacctgcaaccgtcaagtttgatggtgaaggatggtatacactccatgtg 95  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||| ||||    
T  24253565 cttactgaagagtgtcgcatcaacttcgaggtacctgcaaccgtcaggtttgatggtgaaggatgctatacactccctgtg 24253645  T

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Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 15 - 95
Target Start/End: Original strand, 22567426 - 22567506
Alignment:
Q  15 cttactgaagagtgtcgcatcaacttcgaggtacctgcaaccgtcaagtttgatggtgaaggatggtatacactccatgtg 95  Q
    |||||||||||||||| ||| ||||||||||| | | |||||||||||||  ||||||||||||| |||| ||||| ||||    
T  22567426 cttactgaagagtgtcacattaacttcgaggttcttacaaccgtcaagttcaatggtgaaggatgttatatactccttgtg 22567506  T

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Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 92 - 159
Target Start/End: Original strand, 22567540 - 22567607
Alignment:
Q  92 tgtgattccagagcaaatgcgaaccttatgagtctaaagaaggtaagcgagttaggaaatctgaaaat 159  Q
    ||||||||| |||| |||| |||||| |||||||| ||||||| |||||||||||| |||||||||||    
T  22567540 tgtgattccggagccaatgtgaacctaatgagtcttaagaaggcaagcgagttagggaatctgaaaat 22567607  T

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Target: chr3 (Bit Score: 85; Significance: 3e-40; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 324 - 448
Target Start/End: Original strand, 20863638 - 20863762
Alignment:
Q  324 ccatgttatgttttattgatgcaaattttgctgaaatttgctgaaagaattcaaagtttgatagggaattatcaatcaacaaaactttgggggtaaacca 423  Q
    ||||||||| || |||| |||||||| |||||||||||||| |||||||||||||| |||||||||||| | ||||||| ||||||||||||| ||||||    
T  20863638 ccatgttattttctattcatgcaaatcttgctgaaatttgcagaaagaattcaaagattgatagggaatcaccaatcaagaaaactttgggggaaaacca 20863737  T
Q  424 tatgatagtaaattaatatatagat 448  Q
    |||||||||||||||||||||||||    
T  20863738 tatgatagtaaattaatatatagat 20863762  T

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Target: chr3; HSP #2
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 222 - 288
Target Start/End: Original strand, 20863362 - 20863428
Alignment:
Q  222 tgtattcccatcaaagtcctatattgatgcatgattaggattaattttgttgttgattattactgct 288  Q
    |||| ||||||||||||||||| ||||||||||||||||||||||||| ||||||||| ||||||||    
T  20863362 tgtaatcccatcaaagtcctatcttgatgcatgattaggattaattttattgttgattcttactgct 20863428  T

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Target: chr7 (Bit Score: 75; Significance: 3e-34; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 453 - 567
Target Start/End: Original strand, 19325618 - 19325737
Alignment:
Q  453 ttaacaatataataagtcaa-cagcaaaatatacttgcaatctattctattactat----ggaatgacaaagatttcaaaacaacacgcatgaattcaaa 547  Q
    |||||||||||||||||||| || ||||||||| ||||||||||||||||||||||    |||||||||| |||||||||||||| ||||||||||||||    
T  19325618 ttaacaatataataagtcaaacatcaaaatataattgcaatctattctattactatatatggaatgacaaggatttcaaaacaacccgcatgaattcaaa 19325717  T
Q  548 caaattagaacaagtaaatc 567  Q
    |||||| |||||||||||||    
T  19325718 caaattggaacaagtaaatc 19325737  T

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Target: chr7; HSP #2
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 222 - 288
Target Start/End: Original strand, 19324417 - 19324483
Alignment:
Q  222 tgtattcccatcaaagtcctatattgatgcatgattaggattaattttgttgttgattattactgct 288  Q
    |||| ||||||||||||||||| ||||||||||||||||||||||||| ||||||||| ||||||||    
T  19324417 tgtaatcccatcaaagtcctatcttgatgcatgattaggattaattttattgttgattcttactgct 19324483  T

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Target: chr7; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 318 - 413
Target Start/End: Complemental strand, 19820257 - 19820162
Alignment:
Q  318 tagaagccatgttatgttttattgatgcaaattttgctgaaatttgctgaaagaattcaaagtttgatagggaattatcaatcaacaaaactttgg 413  Q
    ||||||||||| ||| || | ||||||| ||  ||||||||||| || |||| ||||||||| |||||||||||||| ||||||||||||||||||    
T  19820257 tagaagccatgatatattctcttgatgccaagcttgctgaaattagcagaaataattcaaagattgatagggaattaccaatcaacaaaactttgg 19820162  T

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Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 375 - 434
Target Start/End: Original strand, 19324851 - 19324910
Alignment:
Q  375 caaagtttgatagggaattatcaatcaacaaaactttgggggtaaaccatatgatagtaa 434  Q
    ||||| |||||||||||| | ||||||| ||||||||||||| |||||||||||||||||    
T  19324851 caaagattgatagggaatcaacaatcaagaaaactttgggggaaaaccatatgatagtaa 19324910  T

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Target: chr2 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 16 - 95
Target Start/End: Complemental strand, 11389941 - 11389862
Alignment:
Q  16 ttactgaagagtgtcgcatcaacttcgaggtacctgcaaccgtcaagtttgatggtgaaggatggtatacactccatgtg 95  Q
    ||||||||||| || |||||||||||||||||| ||   ||| ||||||||| ||||||||||| |||||||||| ||||    
T  11389941 ttactgaagagggttgcatcaacttcgaggtacatgtgtccgccaagtttgacggtgaaggatgttatacactccctgtg 11389862  T

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Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 16 - 95
Target Start/End: Complemental strand, 11406602 - 11406523
Alignment:
Q  16 ttactgaagagtgtcgcatcaacttcgaggtacctgcaaccgtcaagtttgatggtgaaggatggtatacactccatgtg 95  Q
    ||||||||||| || |||||||||||||||||| ||   ||| ||||||||| ||||||||||| |||||||||| ||||    
T  11406602 ttactgaagagggttgcatcaacttcgaggtacatgtgtccgccaagtttgacggtgaaggatgttatacactccctgtg 11406523  T

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Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 497 - 567
Target Start/End: Complemental strand, 29642735 - 29642665
Alignment:
Q  497 tctattactatggaatgacaaagatttcaaaacaacacgcatgaattcaaacaaattagaacaagtaaatc 567  Q
    |||||||||||| ||| | || |||||||||| ||||  |||||||||||| ||||| |||||||||||||    
T  29642735 tctattactatgaaattataaggatttcaaaataacatacatgaattcaaataaatttgaacaagtaaatc 29642665  T

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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 309 - 415
Target Start/End: Complemental strand, 29643570 - 29643464
Alignment:
Q  309 ctttggaaatagaagccatgttatgttttattgatgcaaattttgctgaaatttgctgaaagaattcaaagtttgatagggaattatcaatcaacaaaac 408  Q
    |||| ||| ||||||||||||||| || | |||||||  |  || ||| |||| || |||| ||||||||| ||| ||| |||||| |||||||||||||    
T  29643570 ctttagaagtagaagccatgttatattctcttgatgctgagcttactggaattagcagaaataattcaaagattggtagagaattaccaatcaacaaaac 29643471  T
Q  409 tttgggg 415  Q
    |||||||    
T  29643470 tttgggg 29643464  T

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Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 309 - 415
Target Start/End: Complemental strand, 29648789 - 29648683
Alignment:
Q  309 ctttggaaatagaagccatgttatgttttattgatgcaaattttgctgaaatttgctgaaagaattcaaagtttgatagggaattatcaatcaacaaaac 408  Q
    |||| ||| ||||||||||||||| || | |||||||  |  || ||| |||| || |||| ||||||||| ||| ||| |||||| |||||||||||||    
T  29648789 ctttagaagtagaagccatgttatattctcttgatgctgagcttactggaattagcagaaataattcaaagattggtagagaattaccaatcaacaaaac 29648690  T
Q  409 tttgggg 415  Q
    |||||||    
T  29648689 tttgggg 29648683  T

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Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 501 - 567
Target Start/End: Original strand, 29820890 - 29820956
Alignment:
Q  501 ttactatggaatgacaaagatttcaaaacaacacgcatgaattcaaacaaattagaacaagtaaatc 567  Q
    |||||||| ||||| | ||||||||||| ||||  |||||||||||| ||||| |||||||||||||    
T  29820890 ttactatgaaatgatatagatttcaaaataacatacatgaattcaaataaattcgaacaagtaaatc 29820956  T

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Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 354 - 415
Target Start/End: Original strand, 29596546 - 29596607
Alignment:
Q  354 ctgaaatttgctgaaagaattcaaagtttgatagggaattatcaatcaacaaaactttgggg 415  Q
    |||||||| || |||| ||||||||| ||||||| |||||| ||||||||||||| ||||||    
T  29596546 ctgaaattagcagaaataattcaaagattgatagagaattaccaatcaacaaaacattgggg 29596607  T

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