View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9613_low_3 (Length: 541)
Name: NF9613_low_3
Description: NF9613
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9613_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 464; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 464; E-Value: 0
Query Start/End: Original strand, 1 - 523
Target Start/End: Complemental strand, 7723351 - 7722839
Alignment:
| Q |
1 |
aagagtacaatcaacagaagaagatgaagaattcggagtgaagcaatatgtttcaggttcatgatcataaggtgtagaggaggagaataacattgagaat |
100 |
Q |
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| T |
7723351 |
aagagtacaatcaacagaagaagatgaagaattaggagtgaagcaatatgtttcaggttcatgatcataaggtgtagaggaggagaataacattgagaat |
7723252 |
T |
|
| Q |
101 |
gagttgttttgtccatgaaacataccacatgaacagtgtcccatcacgtgttgcccttgagatgaacgatgcatcattctttgtgaaaaagagtaatgga |
200 |
Q |
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| T |
7723251 |
gagttgttttgtccatgaaacataccacatgaacagtgtcccatcacgtgttgcccttgagatgaacgatgcatcattctttgtgaaaaagagtaatgga |
7723152 |
T |
|
| Q |
201 |
aaatgaatgatttgaagggnnnnnnnagagtagagtagagtagagaagagtgaattgttgtcttgtagtgtttgaagataataaaatgtcgaaatactag |
300 |
Q |
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| T |
7723151 |
aaatgaatgatttgaaggg----------gttttttagagtagagaagagtgaattgttgtcttgtagtgtttgaagataataaaatgtcgaaatactag |
7723062 |
T |
|
| Q |
301 |
tcagcacctgcagtccacgttgtcgtgaattgcaaatggagacatgtacatacaaatacaaaatatatatagtaaaggagataaaattatagagcataag |
400 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
7723061 |
tcagcacctgcagtccacgttgtcgtgaattgcaaatggagacatgtacatacaaatacaaaatatatatagtaaaggagataaaattataaagcataag |
7722962 |
T |
|
| Q |
401 |
agagagagggacccaatgcaataaatgaaatgaagggtaagtcagggagtgagtgtgtaatgtaagcaagtgtttgagtttctattatatctctgcagaa |
500 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7722961 |
agagagagggacccaatgcaataaatgaaatgaagggtaagtcagggagtgagtgtgtaatgtaagcaagtgtttgagtttctattatatctctgcagaa |
7722862 |
T |
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| Q |
501 |
ttactactgtttatgacaccctt |
523 |
Q |
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||||||||||||||||||||||| |
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| T |
7722861 |
ttactactgtttatgacaccctt |
7722839 |
T |
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