View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9613_low_5 (Length: 533)
Name: NF9613_low_5
Description: NF9613
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9613_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 102; Significance: 2e-50; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 156 - 334
Target Start/End: Original strand, 48449616 - 48449798
Alignment:
| Q |
156 |
gaagctgagaaacattctatagttcattttatcattgacaactccaaaggttgtttcacttgtatttgttttt----gaggtggataatttgtttctatt |
251 |
Q |
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| T |
48449616 |
gaagctaagaaacattctatagtatattttatcattgactacttcaaagcttgtttcacttgtatttttttttttttgtggtggataatttgtttctatt |
48449715 |
T |
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| Q |
252 |
gtatgattgtgatgattttgcagaatagaaaaattaaagccagagaaggagattcaatgggccaaatctgaaattctgcgacg |
334 |
Q |
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| T |
48449716 |
gtatgattgtgaaaatttttcagtatggaaaaattaaagccagagaaggagattcaacgggccaagtccgaaattctgcgacg |
48449798 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 68 - 112
Target Start/End: Original strand, 48449513 - 48449557
Alignment:
| Q |
68 |
tttattgtcattttcagcaaattatttgttttaaactgatgaatt |
112 |
Q |
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| T |
48449513 |
tttattgtcattttcagcatattctttgttttaaactgacgaatt |
48449557 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 94; Significance: 1e-45; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 400 - 526
Target Start/End: Original strand, 34227320 - 34227450
Alignment:
| Q |
400 |
ttgcttgaccactggttcaatgttagcgagcaaaatatcttctttaagtacatgaactgtgcacttgaag----atgatatcaagaaagttgttggtata |
495 |
Q |
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| T |
34227320 |
ttgcttgactactggttcaatgttagtgagccgaatatcttctttaagtacatgaactgtgcacttgaagatgaatgatatcaagaaagttgttggtata |
34227419 |
T |
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| Q |
496 |
aggtatctgcttctgtcaagcttctgtgctt |
526 |
Q |
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| T |
34227420 |
aggtatctgcttctgtcaagcttctatgctt |
34227450 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 18 - 220
Target Start/End: Original strand, 34226951 - 34227157
Alignment:
| Q |
18 |
atctcaaatgcgcaaagttagggacaattctgaaaattatatgtttggaatttattgt----cattttcagcaaattatttgttttaaactgatgaattc |
113 |
Q |
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| T |
34226951 |
atctcaaatgcgtaaagttatggacaattatgaaaattacatgtttcgaatttattgtttgtcattttcagaaaattctttgttttaaactgatgaattc |
34227050 |
T |
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| Q |
114 |
tgtagaagttagggatannnnnnnnnnnnnnnnnnnnnnnnngaagctgagaaacattctatagttcattttatcattgacaactccaaaggttgtttca |
213 |
Q |
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| T |
34227051 |
tgtagcagttagggatagtttgttttcttgtttgttttttgtgaagctgagaaacattctatagttcattttatcattgacaactccaaaggttgtttta |
34227150 |
T |
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| Q |
214 |
cttgtat |
220 |
Q |
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| T |
34227151 |
cttgtat |
34227157 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 250 - 399
Target Start/End: Original strand, 34227152 - 34227292
Alignment:
| Q |
250 |
ttgtatgattgtgatgattttgcagaatagaaaaattaaagccagagaaggagattcaatgggccaaatctgaaattctgcgacgtaattagtttctggt |
349 |
Q |
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| T |
34227152 |
ttgtatgattgtgataattttgcagcatgaaaatattaaagccagagaaggagattc--------------gaaattctgagacataattagtttctggt |
34227237 |
T |
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| Q |
350 |
atccggattag-----tatttttcacatcagctatgcagacaatgacactagttt |
399 |
Q |
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| T |
34227238 |
atccggattagttttttttttttcacatcaactatgcagacaacgacactagttt |
34227292 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 445 - 520
Target Start/End: Complemental strand, 2755471 - 2755396
Alignment:
| Q |
445 |
aagtacatgaactgtgcacttgaagatgatatcaagaaagttgttggtataaggtatctgcttctgtcaagcttct |
520 |
Q |
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| T |
2755471 |
aagtacatgaaccgtgcgcttgaagatgatttcaagaaagttgtcggtattaggtatgcgcttctatcaagtttct |
2755396 |
T |
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