View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9613_low_9 (Length: 343)
Name: NF9613_low_9
Description: NF9613
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9613_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 308; Significance: 1e-173; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 21 - 336
Target Start/End: Original strand, 29819530 - 29819845
Alignment:
| Q |
21 |
aacgaaaacaaaaaatagttttataaagtttgttttaggcaaatatttcataaagttagcatgccctaagctaagtttagcaaagaacaaacaaattcta |
120 |
Q |
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| T |
29819530 |
aacgaaaacaaaaaatagttttataaagtttgttttaggcaaatatttcataaagttagcatgccctaagctaagtttagcaaagaacaaacaaattcta |
29819629 |
T |
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| Q |
121 |
acataacaaggaaaattgaagaatattcaatatcccaaatatcaaattttaattactatatggatccatcatgctatgtgatgggaagatagatatatgt |
220 |
Q |
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| T |
29819630 |
acataacaaggaaaattgaagaatattcaatatcccaaatatcacattttaattactatatggatccatcatgctatgtgatgggaagatagatatatgt |
29819729 |
T |
|
| Q |
221 |
caacatcccagtaggatgaataaaacagaaaatcttcggtatgatatgcaacagaaaaatatttcgcaagcttaaaagtaaattttgtgcataattataa |
320 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29819730 |
caacatcccagtaggatgaataaaacagaaaatcttcggtatgacatgcaacagaaaaatatttcgcaagcttaaaagtaaattttgtgcataattataa |
29819829 |
T |
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| Q |
321 |
tgtgttagaacacgaa |
336 |
Q |
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|||||||||||||||| |
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| T |
29819830 |
tgtgttagaacacgaa |
29819845 |
T |
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