View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9614_low_4 (Length: 255)
Name: NF9614_low_4
Description: NF9614
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9614_low_4 |
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Alignment Details
Target: chr6 (Bit Score: 78; Significance: 2e-36; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 160 - 249
Target Start/End: Complemental strand, 15064305 - 15064216
Alignment:
| Q |
160 |
tgacaagacacatattatggaaatatactagagctagttgttgagagattctaacttaatttgtccatgcatgcatgacacctatgcttc |
249 |
Q |
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| T |
15064305 |
tgacaagacacatattatggagatatactagagctagttgttgagagattctagcttaatttgtccatgcatgcattacacctatgcttc |
15064216 |
T |
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Target: chr6; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 19 - 68
Target Start/End: Complemental strand, 15064446 - 15064397
Alignment:
| Q |
19 |
aggtaactgaacacaatattcatgagtaaaactagcaagacacaacatgc |
68 |
Q |
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| T |
15064446 |
aggtaactgaacagaatattcatgagtaaaactagcaagacacaacatgc |
15064397 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 199 - 249
Target Start/End: Complemental strand, 15070988 - 15070938
Alignment:
| Q |
199 |
gttgagagattctaacttaatttgtccatgcatgcatgacacctatgcttc |
249 |
Q |
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| T |
15070988 |
gttgagagattctagcttaatttgtccatgcatgcataacacctatgcttc |
15070938 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 160 - 249
Target Start/End: Original strand, 30854376 - 30854465
Alignment:
| Q |
160 |
tgacaagacacatattatggaaatatactagagctagttgttgagagattctaacttaatttgtccatgcatgcatgacacctatgcttc |
249 |
Q |
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| T |
30854376 |
tgacaagacacatattatggtgatagactaaagctagctgtctaaagattccagcttaatttgtccatgcatgcatgacacctatgcttc |
30854465 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 203 - 249
Target Start/End: Original strand, 30878618 - 30878664
Alignment:
| Q |
203 |
agagattctaacttaatttgtccatgcatgcatgacacctatgcttc |
249 |
Q |
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| T |
30878618 |
agagattctagcttaatttgtccatgcatgcatgacacctatgcttc |
30878664 |
T |
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