View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9615_high_1 (Length: 659)
Name: NF9615_high_1
Description: NF9615
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9615_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 418; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 418; E-Value: 0
Query Start/End: Original strand, 14 - 622
Target Start/End: Original strand, 23429158 - 23429767
Alignment:
| Q |
14 |
ttggactgatatcgtggtttataacccggaggaaagtcgtgcttgaaataacaatgcttaatagtgtgaccaagtctagaataaaaagtgcattattttt |
113 |
Q |
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| T |
23429158 |
ttggaccgatattgtggtttataacccggaggaaagtcgtgcttgaaataacaatgcttaatagtgcgaccaagtctagaatagaaagtgcattattttt |
23429257 |
T |
|
| Q |
114 |
tatgaccatgacctcctgcatgaaatcttccacgacctcacgggtaaaaaatgcctctaccttatgtaggtctttctcttacattataaaagactatagg |
213 |
Q |
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| T |
23429258 |
tatgaccgtgacttcctgcatgagatctgccacaacctcacgggtaaaaaatgtctctaccatatgtaggtatttcttttacattatacaagactgtagg |
23429357 |
T |
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| Q |
214 |
ctgaaaggatgaagtactagccaaatgatatttttgcttaataataagtgagaaaatctcacaaattgaaggcaaatgtttcatgagtaagatttgagat |
313 |
Q |
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| T |
23429358 |
ctaaaaggatgaagtactggccaaatgatctttttgcttaataataagggagaaaatctcacaaattgaaggcaaaggtttcatgagcaagatttgagat |
23429457 |
T |
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| Q |
314 |
ctggctatgctataatcatcatataaccctttcaaaaaacggatgtcatactcaatcttgcattggttgtgcataattctaaatgcatcacaattacatc |
413 |
Q |
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| T |
23429458 |
ctggctatgctataatcaacatataaccctttcagaaaacggatgacatactcaatctcgcattggttgcgcataattctaaaggcatcacaattgcatc |
23429557 |
T |
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| Q |
414 |
taacattgcatgaacatatagggattgaacgcaaatcctctaaattttcacaaacaa-ttttgtgtcggtgaaaaactcattaacatatcattctccttg |
512 |
Q |
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| T |
23429558 |
taacattgcaagattggatagggattgaacgcaaattctctaaattttcacaaacaatttttgtgtcggtgaaaaactcattaacatatcattctccttg |
23429657 |
T |
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| Q |
513 |
tttcatggagtgannnnnnnnaaggagatcaaaacgtttgaaatgagtacatttagtgaattggtgacacagtttgtcccacaaaactttagcattgtca |
612 |
Q |
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| T |
23429658 |
tttcatggagtgaatttcttgaaggagatcaaaaagtttgaaatgagtaaatttggtaaattggtgacacaggttgtcccacaaaactttagcattgtca |
23429757 |
T |
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| Q |
613 |
atgcacacga |
622 |
Q |
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| T |
23429758 |
atgtacacga |
23429767 |
T |
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