View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9615_high_12 (Length: 222)
Name: NF9615_high_12
Description: NF9615
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9615_high_12 |
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Alignment Details
Target: chr1 (Bit Score: 141; Significance: 4e-74; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 141; E-Value: 4e-74
Query Start/End: Original strand, 18 - 190
Target Start/End: Original strand, 10547560 - 10547737
Alignment:
| Q |
18 |
actcattgccacttccattcactatggaagctatagataaaacaataaaaaataacacaaatgagacatgaaacttgtttatggtgacaaaatgcgttgt |
117 |
Q |
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| T |
10547560 |
actcattgccacttccattcactatggaagctatagataaaacaataaaaaataacacaaatgagacatgaaacttgtttatggtgagaaaatgcgttgt |
10547659 |
T |
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| Q |
118 |
attactagtcattttgtcggtgagttacact----tataaacaacataattcattgg-aggtgtgtgtatatatatat |
190 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||| | ||||||| |
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| T |
10547660 |
attactagtcattttgtcggtgagttacacttatatataaacaacataattcattggaaggtgtgtgtgtctatatat |
10547737 |
T |
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