View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9615_high_2 (Length: 543)

Name: NF9615_high_2
Description: NF9615
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9615_high_2
NF9615_high_2
[»] chr8 (15 HSPs)
chr8 (96-526)||(25603521-25603951)
chr8 (314-509)||(24914013-24914208)
chr8 (314-481)||(25694324-25694491)
chr8 (96-191)||(25799545-25799640)
chr8 (96-227)||(24913747-24913881)
chr8 (96-221)||(25489420-25489547)
chr8 (332-446)||(25645979-25646093)
chr8 (96-227)||(25646236-25646369)
chr8 (96-252)||(25321864-25322004)
chr8 (96-155)||(25694637-25694699)
chr8 (147-193)||(25569168-25569214)
chr8 (223-264)||(24913900-24913941)
chr8 (147-204)||(25340253-25340310)
chr8 (223-264)||(25646176-25646217)
chr8 (103-140)||(25714482-25714519)
[»] scaffold0070 (2 HSPs)
scaffold0070 (314-497)||(18049-18232)
scaffold0070 (96-191)||(17790-17887)


Alignment Details
Target: chr8 (Bit Score: 415; Significance: 0; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 415; E-Value: 0
Query Start/End: Original strand, 96 - 526
Target Start/End: Complemental strand, 25603951 - 25603521
Alignment:
Q  96 ggtgcagtctttggaggagagtagtgagggtcttgactcattgtgtacgaatgggaagaaaagatcttctattactgaactttctaatcagttttttggt 195  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  25603951 ggtgcagtctttggaggagagtagtgagggtcttgactcattgtgtacgaatgggaagaaaagatcttatattactgaactttctaatcagttttttggt 25603852  T
Q  196 tgaatatttctgccttttttgtcatagtaggttgctacataattgtgcataaaaatatttttggacatgcttttcatgaatttggagacttgtatatgat 295  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25603851 tgaatatttctgccttttttgtcatagtaggttgctacataattgtgcataaaaatatttttggacatgcttttcatgaatttggagacttgtatatgat 25603752  T
Q  296 caaattttgttttgtactttaacaagcctaagggacgacttagacaaaaacgaagacgatatttcctttcttaccaagtttctcaagctttatgtcccta 395  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||    
T  25603751 caaattttgttttgtactttaacaagcctaagggacgacttagacaaaaacgaagatgatatttcctttcttaccaagtttcttaagctttatgtcccta 25603652  T
Q  396 atatagttttgagaagctttaagtttctcaaatgtctctaatataattttcaagatgtggtgttgcgaattgaatgatgatgaagatgttcatagacata 495  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  25603651 atatagttttgagaagctttaagtttctcaaatgtctctaatataattttcaagatgtggtgttgctaattgaatgatgatgaagatgttcatagacata 25603552  T
Q  496 ttaaaggcccaagacagggaaatatatgaag 526  Q
    |||||||||||||||||||||||||||||||    
T  25603551 ttaaaggcccaagacagggaaatatatgaag 25603521  T

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Target: chr8; HSP #2
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 314 - 509
Target Start/End: Original strand, 24914013 - 24914208
Alignment:
Q  314 ttaacaagcctaagggacgacttagacaaaaacgaagacgatatttcctttcttaccaagtttctcaagctttatgtccctaatatagttttgagaagct 413  Q
    |||| ||||||||||||| |||| ||||||||   ||| |||||||||||||||||||||||||||||||||||||||  ||||||||||| ||||||||    
T  24914013 ttaagaagcctaagggacaacttggacaaaaagtgagatgatatttcctttcttaccaagtttctcaagctttatgtctttaatatagtttagagaagct 24914112  T
Q  414 ttaagtttctcaaatgtctctaatataattttcaagatgtggtgttgcgaattgaatgatgatgaagatgttcatagacatattaaaggcccaaga 509  Q
    | |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||| ||| ||||    
T  24914113 tcaagtttctcaaatgtctctaatataattttcaagatgtggtgttgctaattgaatgatgatgaagatggtcatagacatattaaaagccaaaga 24914208  T

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Target: chr8; HSP #3
Raw Score: 120; E-Value: 4e-61
Query Start/End: Original strand, 314 - 481
Target Start/End: Complemental strand, 25694491 - 25694324
Alignment:
Q  314 ttaacaagcctaagggacgacttagacaaaaacgaagacgatatttcctttcttaccaagtttctcaagctttatgtccctaatatagttttgagaagct 413  Q
    |||| |||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||| || |||  ||||||||||| ||||||||    
T  25694491 ttaagaagcctaagggacgacttggacaaaaacgaagatgatatttcctttcttaccaagtttctcaagctataagtctttaatatagtttagagaagct 25694392  T
Q  414 ttaagtttctcaaatgtctctaatataattttcaagatgtggtgttgcgaattgaatgatgatgaaga 481  Q
    | |||||||||||||||||||||||||||||| ||||||||||||| | |||||||||||||||||||    
T  25694391 tcaagtttctcaaatgtctctaatataatttttaagatgtggtgttactaattgaatgatgatgaaga 25694324  T

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Target: chr8; HSP #4
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 96 - 191
Target Start/End: Complemental strand, 25799640 - 25799545
Alignment:
Q  96 ggtgcagtctttggaggagagtagtgagggtcttgactcattgtgtacgaatgggaagaaaagatcttctattactgaactttctaatcagttttt 191  Q
    |||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||    
T  25799640 ggtgcagtctttggaggagagtagtgagggtcttgaatcattgtgtaagaatgggaagaaaagatcttctattactgaactttgtaatcagttttt 25799545  T

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Target: chr8; HSP #5
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 96 - 227
Target Start/End: Original strand, 24913747 - 24913881
Alignment:
Q  96 ggtgcagtctttggaggagagtagtgagggtcttga----ctcattgtgtacgaatgggaagaaaagatcttctattactgaactttctaatcagttttt 191  Q
    |||||||||||||||||| ||||||||| |||||||    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||    
T  24913747 ggtgcagtctttggaggaaagtagtgagcgtcttgattgactcattgtgtaagaatgggaagaaaagatcttctattactgaactttctaatcag-tttt 24913845  T
Q  192 tggttgaatatttctgccttttttgtcatagtaggt 227  Q
    |||||||||||||||| ||||| ||| |||| ||||    
T  24913846 tggttgaatatttctgtcttttatgttatagcaggt 24913881  T

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Target: chr8; HSP #6
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 96 - 221
Target Start/End: Complemental strand, 25489547 - 25489420
Alignment:
Q  96 ggtgcagtctttggaggaga---gtagtgagggtcttgactcattgtgtacgaatgggaagaaaagatcttctattactgaactttctaatcagtttttt 192  Q
    ||||||||||||||||||||   ||||| ||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||| ||||    
T  25489547 ggtgcagtctttggaggagaatagtagtaagggtcttgactcattgtgtaagaataggaagaaaagatcttctattactgaactttctaatcagt-tttt 25489449  T
Q  193 ggttgaatatttctgccttttttgtcata 221  Q
    | ||||||||||||| ||||| |||||||    
T  25489448 gattgaatatttctgtcttttatgtcata 25489420  T

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Target: chr8; HSP #7
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 332 - 446
Target Start/End: Complemental strand, 25646093 - 25645979
Alignment:
Q  332 gacttagacaaaaacgaagacgatatttcctttcttaccaagtttctcaagctttatgtccctaatatagttttgagaagctttaagtttctcaaatgtc 431  Q
    |||||||||||||||  ||| |||||||||||||||||||||||||||||||||||||||  ||||||||||| ||||||||| ||||| ||||||||||    
T  25646093 gacttagacaaaaactgagatgatatttcctttcttaccaagtttctcaagctttatgtctttaatatagtttagagaagcttcaagttcctcaaatgtc 25645994  T
Q  432 tctaatataattttc 446  Q
    |||||||||||||||    
T  25645993 tctaatataattttc 25645979  T

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Target: chr8; HSP #8
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 96 - 227
Target Start/End: Complemental strand, 25646369 - 25646236
Alignment:
Q  96 ggtgcagtctttggaggaga---gtagtgagggtcttgactcattgtgtacgaatgggaagaaaagatcttctattactgaactttctaatcagtttttt 192  Q
    ||||||||||||||||||||   ||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| ||||    
T  25646369 ggtgcagtctttggaggagaatagtagtaagggtcttgactcattgtgtaagaatgggaagaaaagatcttctattactgaaccttctaatcagt-tttt 25646271  T
Q  193 ggttgaatatttctgccttttttgtcatagtaggt 227  Q
     |||||||||||||| ||||| ||| |||| ||||    
T  25646270 agttgaatatttctgtcttttatgttatagcaggt 25646236  T

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Target: chr8; HSP #9
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 96 - 252
Target Start/End: Complemental strand, 25322004 - 25321864
Alignment:
Q  96 ggtgcagtctttggaggagagtagtgagggtcttgactcattgtgtacgaatgggaagaaaagatcttctattactgaactttctaatcagttttttggt 195  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||               ||||||||| ||||||||    
T  25322004 ggtgcagtctttggaggagagtagtgagggtcttgactcattgtgtaagaatgggaagaaaagatct---------------tctaatcag-tttttggt 25321921  T
Q  196 tgaatatttctgccttttttgtcatagtaggttgctacataattgtgcataaaaata 252  Q
    ||||||| |||||||||| |||||||| |||||||||||||||| |||| |||||||    
T  25321920 tgaatatatctgccttttatgtcatagcaggttgctacataattttgcagaaaaata 25321864  T

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Target: chr8; HSP #10
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 96 - 155
Target Start/End: Complemental strand, 25694699 - 25694637
Alignment:
Q  96 ggtgcagtctttggaggaga---gtagtgagggtcttgactcattgtgtacgaatgggaagaa 155  Q
    ||||||||||||||||||||   ||||| ||||||||||||||||||||| ||||||||||||    
T  25694699 ggtgcagtctttggaggagaatagtagtaagggtcttgactcattgtgtaagaatgggaagaa 25694637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 147 - 193
Target Start/End: Complemental strand, 25569214 - 25569168
Alignment:
Q  147 tgggaagaaaagatcttctattactgaactttctaatcagttttttg 193  Q
    ||||| ||||||||||||||||||||||||| ||||||| |||||||    
T  25569214 tgggatgaaaagatcttctattactgaacttgctaatcatttttttg 25569168  T

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Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 223 - 264
Target Start/End: Original strand, 24913900 - 24913941
Alignment:
Q  223 taggttgctacataattgtgcataaaaatatttttggacatg 264  Q
    |||||||||||||||||||||| ||||||||  |||||||||    
T  24913900 taggttgctacataattgtgcagaaaaatatagttggacatg 24913941  T

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Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 147 - 204
Target Start/End: Complemental strand, 25340310 - 25340253
Alignment:
Q  147 tgggaagaaaagatcttctattactgaactttctaatcagttttttggttgaatattt 204  Q
    ||||| ||||||||||||||||  ||||||| ||||||| |||||| |||| ||||||    
T  25340310 tgggatgaaaagatcttctatttatgaacttgctaatcattttttttgttgcatattt 25340253  T

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Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 223 - 264
Target Start/End: Complemental strand, 25646217 - 25646176
Alignment:
Q  223 taggttgctacataattgtgcataaaaatatttttggacatg 264  Q
    |||||||||||||||||||||| ||||||||  |||||||||    
T  25646217 taggttgctacataattgtgcagaaaaatatagttggacatg 25646176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 103 - 140
Target Start/End: Complemental strand, 25714519 - 25714482
Alignment:
Q  103 tctttggaggagagtagtgagggtcttgactcattgtg 140  Q
    |||||||||||||||||||||| ||||||||| |||||    
T  25714519 tctttggaggagagtagtgaggctcttgactccttgtg 25714482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0070 (Bit Score: 136; Significance: 1e-70; HSPs: 2)
Name: scaffold0070
Description:

Target: scaffold0070; HSP #1
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 314 - 497
Target Start/End: Original strand, 18049 - 18232
Alignment:
Q  314 ttaacaagcctaagggacgacttagacaaaaacgaagacgatatttcctttcttaccaagtttctcaagctttatgtccctaatatagttttgagaagct 413  Q
    |||| |||| ||| ||||||||| |||||||||||||| ||||||||||||||||||||||||||||||| |||||||  ||||||||||| ||||||||    
T  18049 ttaagaagcttaaaggacgacttggacaaaaacgaagatgatatttcctttcttaccaagtttctcaagccttatgtctttaatatagtttagagaagct 18148  T
Q  414 ttaagtttctcaaatgtctctaatataattttcaagatgtggtgttgcgaattgaatgatgatgaagatgttcatagacatatt 497  Q
    | |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||    
T  18149 tcaagtttctcaaatgtctctaatataattttcaagatgtggtgttgctaattgaatgatgatgaagatggtcatagacatatt 18232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0070; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 96 - 191
Target Start/End: Original strand, 17790 - 17887
Alignment:
Q  96 ggtgcagtctttggaggagagtagtgagggtcttga----ctcattgtgtacgaatgggaagaaaagatcttctattactgaactttctaatcagttttt 191  Q
    ||||||||| |||||||| |||||||||||||||||    ||||||||||| |||||||||||||||||  |||||||||||||||||||||||||||||    
T  17790 ggtgcagtccttggaggaaagtagtgagggtcttgattgactcattgtgtaagaatgggaagaaaagat--tctattactgaactttctaatcagttttt 17887  T

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