View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9615_high_6 (Length: 323)

Name: NF9615_high_6
Description: NF9615
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9615_high_6
NF9615_high_6
[»] chr2 (1 HSPs)
chr2 (10-304)||(18716203-18716497)


Alignment Details
Target: chr2 (Bit Score: 267; Significance: 1e-149; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 10 - 304
Target Start/End: Original strand, 18716203 - 18716497
Alignment:
Q  10 gtgttggtggggatcttatgaaaacaccaacgttgttgttgttgatgttttttgaggtataacaatcatgtttcaaaattccactttcttcaccaccatc 109  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18716203 gtgttggtggggatcttttgaaaacaccaacgttgttgttgttgatgttttttgaggtataacaatcatgtttcaaaattccactttcttcaccaccatc 18716302  T
Q  110 ataaaaaaccttagttataggtttattagattcatcatggtaagtcacataagtgtaatcttctggacttccaacaagaatctcatttgcaaaatttcca 209  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18716303 ataaaaaaccttagtgataggtttattagattcatcatggtaagtcacataagtgtaatcttctggacttccaacaagaatctcatttgcaaaatttcca 18716402  T
Q  210 ttttgttgttgatgattttgaatcggaattgtgatcggttctcctgatcgatttgacttaggtgtacaaacatgttttggaacaacctcgtaccc 304  Q
    |||||||| |||||||||||||| |||||||||||||||||||||||| |||| | |||||||||||||||||||||||||||||||||||||||    
T  18716403 ttttgttggtgatgattttgaattggaattgtgatcggttctcctgattgattcgtcttaggtgtacaaacatgttttggaacaacctcgtaccc 18716497  T

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