View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9615_low_15 (Length: 278)
Name: NF9615_low_15
Description: NF9615
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9615_low_15 |
 | |
|
| [»] scaffold0651 (2 HSPs) |
| | |
|
Alignment Details
Target: scaffold0651 (Bit Score: 248; Significance: 1e-138; HSPs: 2)
Name: scaffold0651
Description:
Target: scaffold0651; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 1 - 260
Target Start/End: Original strand, 8195 - 8454
Alignment:
| Q |
1 |
gaaagactgcacatccttgcttgattcatcatcttttctaagagcatcatccattggcaatgaaggcaacacaacttcacatatgcttgtgagtgactcc |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8195 |
gaaagactgcacatccttgcttgattcatcatcttttgtaagagcatcatccattggcaatgaaggcaacacaacttcacatatgcttgtgagtgactcc |
8294 |
T |
|
| Q |
101 |
atctcagctacagaaaatccatgtttgtatttgctattctctctcacaccactcaacaatggatgacactctcttctcatctttctttctgtattgtgat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8295 |
atctcagctacagaaaatccatgtttgtatttgctattctctctcacaccactcaacaatggatgacactctcttctcatctttctttctgtattgtgat |
8394 |
T |
|
| Q |
201 |
cactcttgatcaccaccttataaaagaactagttaatacagatatgaaaagaattaatat |
260 |
Q |
| |
|
||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8395 |
cactcatgatcaacaccttataaaagaactagttaatacagatatgaaaagaattaatat |
8454 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0651; HSP #2
Raw Score: 146; E-Value: 6e-77
Query Start/End: Original strand, 1 - 190
Target Start/End: Complemental strand, 543 - 354
Alignment:
| Q |
1 |
gaaagactgcacatccttgcttgattcatcatcttttctaagagcatcatccattggcaatgaaggcaacacaacttcacatatgcttgtgagtgactcc |
100 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||| | ||||||||||||||||||| |||||| |||| ||||||||||||||||||||||||||| |
|
|
| T |
543 |
gaaagattgcacatccttgcttgattcatcatcttttgtgagagcatcatccattggcagtgaagggaacattacttcacatatgcttgtgagtgactcc |
444 |
T |
|
| Q |
101 |
atctcagctacagaaaatccatgtttgtatttgctattctctctcacaccactcaacaatggatgacactctcttctcatctttctttct |
190 |
Q |
| |
|
|||||||| |||||||| |||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
443 |
atctcagccacagaaaacccatgtttgtatttgcgattctctctcataccactcaacaatggatgacactctcttctcatctttctttct |
354 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 248; Significance: 1e-138; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 1 - 260
Target Start/End: Complemental strand, 31315502 - 31315243
Alignment:
| Q |
1 |
gaaagactgcacatccttgcttgattcatcatcttttctaagagcatcatccattggcaatgaaggcaacacaacttcacatatgcttgtgagtgactcc |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31315502 |
gaaagactgcacatccttgcttgattcatcatcttttgtaagagcatcatccattggcaatgaaggcaacacaacttcacatatgcttgtgagtgactcc |
31315403 |
T |
|
| Q |
101 |
atctcagctacagaaaatccatgtttgtatttgctattctctctcacaccactcaacaatggatgacactctcttctcatctttctttctgtattgtgat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31315402 |
atctcagctacagaaaatccatgtttgtatttgctattctctctcacaccactcaacaatggatgacactctcttctcatctttctttctgtattgtgat |
31315303 |
T |
|
| Q |
201 |
cactcttgatcaccaccttataaaagaactagttaatacagatatgaaaagaattaatat |
260 |
Q |
| |
|
||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31315302 |
cactcatgatcaacaccttataaaagaactagttaatacagatatgaaaagaattaatat |
31315243 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 146; E-Value: 6e-77
Query Start/End: Original strand, 1 - 190
Target Start/End: Complemental strand, 31330631 - 31330442
Alignment:
| Q |
1 |
gaaagactgcacatccttgcttgattcatcatcttttctaagagcatcatccattggcaatgaaggcaacacaacttcacatatgcttgtgagtgactcc |
100 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||| | ||||||||||||||||||| |||||| |||| ||||||||||||||||||||||||||| |
|
|
| T |
31330631 |
gaaagattgcacatccttgcttgattcatcatcttttgtgagagcatcatccattggcagtgaagggaacattacttcacatatgcttgtgagtgactcc |
31330532 |
T |
|
| Q |
101 |
atctcagctacagaaaatccatgtttgtatttgctattctctctcacaccactcaacaatggatgacactctcttctcatctttctttct |
190 |
Q |
| |
|
|||||||| |||||||| |||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31330531 |
atctcagccacagaaaacccatgtttgtatttgcgattctctctcataccactcaacaatggatgacactctcttctcatctttctttct |
31330442 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University