View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9615_low_19 (Length: 271)
Name: NF9615_low_19
Description: NF9615
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9615_low_19 |
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Alignment Details
Target: chr4 (Bit Score: 184; Significance: 1e-99; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 1 - 253
Target Start/End: Complemental strand, 43567617 - 43567364
Alignment:
| Q |
1 |
gagaattgaaggggaagaaattattttgggactttaggtctgttttgggcttagggtatgtttggcctttttaaattaaaaatgacattttagcaaaaat |
100 |
Q |
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| T |
43567617 |
gagaattgaaggggaagaaattattttgggactttagatcttttttgggcttagggtatgtttggcctttttaaattaaaaatgacattttggcaaaaat |
43567518 |
T |
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| Q |
101 |
atctaagcttgctttatagtacctcaataaaaagtttgtagaagcttcaat--nnnnnnnngcttctaacatattatataatacatccttcctaaaattc |
198 |
Q |
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| T |
43567517 |
atctaagcttgctttatagtacctcaataaaaagtttgtagaagcttcaataaaaaaaaaagcttctaacatattatacaatacatccttcctaaaattc |
43567418 |
T |
|
| Q |
199 |
aatccattttagcataaaaacaataaaaaattctaacttgtttttacggtatctc |
253 |
Q |
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|||||| |||| || ||||| |||||||||||||||||||||||||||||||||| |
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| T |
43567417 |
aatcca-tttaccaaaaaaagaataaaaaattctaacttgtttttacggtatctc |
43567364 |
T |
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