View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9615_low_21 (Length: 250)
Name: NF9615_low_21
Description: NF9615
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9615_low_21 |
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Alignment Details
Target: chr4 (Bit Score: 236; Significance: 1e-130; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 1 - 244
Target Start/End: Original strand, 28094225 - 28094468
Alignment:
| Q |
1 |
ataattgattcatgctttaccctcaacccttgcatgggtgagtccaacacatgcatcaacaaaatctaagtctataaaatccgtagaaaatatctgcaac |
100 |
Q |
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| T |
28094225 |
ataattgattcatgctttaccctcaacccttgcatgggtgagtccaacacatgcatcaacaaaatctaagtctataaaatccgtagaaaatatctgcaac |
28094324 |
T |
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| Q |
101 |
ttatcaccacaccctttagaaaagcactgactaatgaagaatcttgcatatctatgaatgcgttctgtcacaggtttcacacataaaacagggttatcag |
200 |
Q |
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| T |
28094325 |
ttatcaccacaccctttagaaaagcactgactaatgaagaatcttgcatatctatgaatgcgttctgtcacaggtttcacgcataaaacagggttatcag |
28094424 |
T |
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| Q |
201 |
gaacaggcgtaacagtattctcaactctataaaagtattatcta |
244 |
Q |
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| T |
28094425 |
gaacaggcgtaacagtattctcaactctataaaagtattttcta |
28094468 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 60; Significance: 1e-25; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 8 - 239
Target Start/End: Complemental strand, 26156525 - 26156294
Alignment:
| Q |
8 |
attcatgctttaccctcaacccttgcatgggtgagtccaacacatgcatcaacaaaatctaagtctataaaatccgtagaaaatatctgcaacttatcac |
107 |
Q |
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| T |
26156525 |
attcaggcttttccttcaacccttgcatgagtgagtccaacacatgcatcaacaaaatcctcatcaataaaatcggtggaaaagacctgaatcctatccg |
26156426 |
T |
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| Q |
108 |
cacaccctttagaaaagcactgactaatgaagaatcttgcatatctatgaatgcgttctgtcacaggtttcacacataaaacagggttatcaggaacagg |
207 |
Q |
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| T |
26156425 |
catatcccttagcaaagcactgagcaataaagagcctagcatatccatgaatgcgtctcgttacaggtttcacacacaaaacagggttatccgccactgg |
26156326 |
T |
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| Q |
208 |
cgtaacagtattctcaactctataaaagtatt |
239 |
Q |
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| T |
26156325 |
agtaaccgtattctccaccctataaaaatatt |
26156294 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 8 - 239
Target Start/End: Complemental strand, 26169823 - 26169592
Alignment:
| Q |
8 |
attcatgctttaccctcaacccttgcatgggtgagtccaacacatgcatcaacaaaatctaagtctataaaatccgtagaaaatatctgcaacttatcac |
107 |
Q |
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||||| ||||| || |||||||||||||| ||||||||||||||||||||||||||||| || |||||||| || ||||| | ||| | | |||| |
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| T |
26169823 |
attcaggcttttccttcaacccttgcatgagtgagtccaacacatgcatcaacaaaatcctcatcaataaaatcggtggaaaagacctgaatcctatccg |
26169724 |
T |
|
| Q |
108 |
cacaccctttagaaaagcactgactaatgaagaatcttgcatatctatgaatgcgttctgtcacaggtttcacacataaaacagggttatcaggaacagg |
207 |
Q |
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| T |
26169723 |
catatcccttagcaaagcactgagcaataaagagcctagcatatccatgaatgcgtctcgttacaggtttcacacacaaaacagggttatccgccactgg |
26169624 |
T |
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| Q |
208 |
cgtaacagtattctcaactctataaaagtatt |
239 |
Q |
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| T |
26169623 |
agtaaccgtattctccaccctataaaaatatt |
26169592 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 14 - 65
Target Start/End: Original strand, 55164544 - 55164595
Alignment:
| Q |
14 |
gctttaccctcaacccttgcatgggtgagtccaacacatgcatcaacaaaat |
65 |
Q |
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| T |
55164544 |
gcttttccttcaacccttgcatgagtgagtccaacacatgcatcaacaaaat |
55164595 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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