View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9615_low_5 (Length: 516)
Name: NF9615_low_5
Description: NF9615
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9615_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 406; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 406; E-Value: 0
Query Start/End: Original strand, 4 - 499
Target Start/End: Complemental strand, 34760562 - 34760082
Alignment:
| Q |
4 |
tccaatgagatggacatcagaagatgatattctaagagcaagttctatcaaaagatttggaaggaaaccaaaacctgttcggagagattcaactagtagt |
103 |
Q |
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| T |
34760562 |
tccaatcagaagaacaacagaagatgatattctaagagcaagttctatcaaaagatttggaaggaaaccaaaacctgttcggagagattcaactagtagt |
34760463 |
T |
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| Q |
104 |
gatcatgaggtcagtgccttcaaattcaatatcaaagtttaagatatttagaaaacagtaacctcaatgatatttttacacataaatttgacagtaaatt |
203 |
Q |
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| T |
34760462 |
gatcatgaggtcagtgccttcaaattcaatatcaaagtttaagatatttagaaaatagtaacctcaatgatatttttacacataaatttgacagtaaatt |
34760363 |
T |
|
| Q |
204 |
tcaacaacaatttggatggtcaacacaatttgaatatatgattaatcatgttgtaaattatggttaattgtgttttttagttgcgttaacaatccaaatt |
303 |
Q |
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| T |
34760362 |
tcaacaacaatttggatggttagcacaatttgaatatatgattaatcatgttgtaaattatggttaattgtgttttttagttgcgttaacaatccaaatt |
34760263 |
T |
|
| Q |
304 |
gtgcattcatttacgaggaaaatctttgcctctaatttttctttcattccccacattttctttcccagaaagaaaagaacagcactaccttaacagacag |
403 |
Q |
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| T |
34760262 |
gtgcattcatttacgaggaaaatctttgcctctaatttttctttcat---------------tcccagaaagaaaagaacagcactaccttaacagacag |
34760178 |
T |
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| Q |
404 |
tgaagggacatcaccacttgtgtttgtttgtctcttatttgttcagaaaagtaatatcaaaatcctgtattacacgagaaggatcttcttgtacct |
499 |
Q |
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| T |
34760177 |
tgaagggacatcaccacttatgtttgtttgtctcttgtttgttcagaaaagtaatatcaaaatcctgaattacacgagaaggatcttcttgtacct |
34760082 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 175 - 221
Target Start/End: Complemental strand, 35223789 - 35223743
Alignment:
| Q |
175 |
atttttacacataaatttgacagtaaatttcaacaacaatttggatg |
221 |
Q |
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||||| ||| |||||||||||| ||||||||||||| |||||||||| |
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| T |
35223789 |
attttgacaaataaatttgacaataaatttcaacaaaaatttggatg |
35223743 |
T |
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