View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9615_low_6 (Length: 451)

Name: NF9615_low_6
Description: NF9615
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9615_low_6
NF9615_low_6
[»] chr6 (2 HSPs)
chr6 (3-434)||(34241327-34241759)
chr6 (14-163)||(11768602-11768752)
[»] chr3 (4 HSPs)
chr3 (14-301)||(43389191-43389476)
chr3 (14-57)||(35442571-35442615)
chr3 (15-56)||(34134116-34134158)
chr3 (15-54)||(49086190-49086230)
[»] chr8 (5 HSPs)
chr8 (62-301)||(41706669-41706905)
chr8 (14-90)||(41709562-41709640)
chr8 (14-162)||(41707328-41707478)
chr8 (15-56)||(9875370-9875412)
chr8 (15-63)||(41708415-41708464)
[»] chr1 (6 HSPs)
chr1 (70-156)||(41883031-41883117)
chr1 (14-63)||(10459766-10459816)
chr1 (15-63)||(27969900-27969949)
chr1 (15-64)||(8673661-8673711)
chr1 (19-63)||(8674690-8674735)
chr1 (81-161)||(23373559-23373640)
[»] chr4 (4 HSPs)
chr4 (40-156)||(17083942-17084059)
chr4 (39-88)||(17087735-17087784)
chr4 (39-88)||(17095710-17095759)
chr4 (14-63)||(47925546-47925596)
[»] chr7 (3 HSPs)
chr7 (15-63)||(21460130-21460179)
chr7 (16-63)||(19795275-19795323)
chr7 (14-57)||(45721526-45721570)


Alignment Details
Target: chr6 (Bit Score: 381; Significance: 0; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 381; E-Value: 0
Query Start/End: Original strand, 3 - 434
Target Start/End: Original strand, 34241327 - 34241759
Alignment:
Q  3 agacaccaatgaggtggcatttaggatgcacaaatttaaatttgtgcaccatacataagttataaatagttatttttgaccattagattaaagaaaa-ac 101  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||| ||    
T  34241327 agactccaatgaggtggcatttaggatgcacaaatttaaatttgtgcactatacataaattataaatagttatttttgaccattagattaaagaaaaaac 34241426  T
Q  102 attgatcttattatggtaaacctacactatatctttctcactttgtcttcaaccttcctaccatctctcttttcatcaccacccaccaccacatgcaaac 201  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  34241427 attgatcttattatggtaaacctacactatatctttctcactttgtcttcaaccttcctaccatctctcttttcatcaccacccactaccacatgcaaac 34241526  T
Q  202 tcaacaacttcctccgtcggtgtcgcaaccattatcaaactctgaccatttgtttccagccagagatccacttgccagcgatggatttgagtggatcgaa 301  Q
    |||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||  ||| ||||||||| |||||||||||||||||||||||    
T  34241527 tcaacaacttcctccgtcggtgtcgcaaccgttatcgaactctgaccatttgtttccagccgaagacccacttgccggcgatggatttgagtggatcgaa 34241626  T
Q  302 cgaatctagatgtcgtccataaatcaccaccactttcaccaacatcatattgccacaccaccaccagactaccactttgcgctcgccaacaaagtaaaat 401  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34241627 cgaatctagatgtcgtccataaatcaccaccactttcaccaacatcatattgccacaccaccaccagactaccactttgcgctcgccaacaaagtaaaat 34241726  T
Q  402 cttagatctagcaaaagttatggaggtgttatg 434  Q
    ||||||||||||||||||||||||| |||||||    
T  34241727 cttagatctagcaaaagttatggagatgttatg 34241759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 14 - 163
Target Start/End: Original strand, 11768602 - 11768752
Alignment:
Q  14 aggtggcatttaggatgcacaaatt--taaatttgtgcaccatacataagttataaatagttatttttgaccattagattaaagaaaaacattgatctta 111  Q
    |||||||||||||| ||||||||||  |||||||||||||||| || |||||| | | | ||| ||||  ||| ||||||||||| |||||||||| |||    
T  11768602 aggtggcatttagggtgcacaaattgttaaatttgtgcaccatgcacaagttagagaaaattacttttagccactagattaaagagaaacattgatttta 11768701  T
Q  112 ttatggtaaacctacactatatctttctcactttgtcttcaaccttcctacc 163  Q
    |||| ||  | |||||| |||  ||||||||||   ||||||||||||||||    
T  11768702 ttatagttcaactacaccata-atttctcacttaaccttcaaccttcctacc 11768752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 142; Significance: 2e-74; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 14 - 301
Target Start/End: Original strand, 43389191 - 43389476
Alignment:
Q  14 aggtggcatttaggatgcacaaat-ttaaatttgtgcaccatacataagttataaatagttatttttgaccattagattaaagaaaaacattgatcttat 112  Q
    |||||||||||||| |||| || | |||||||||||||||||| | || ||||||||||||||||||||||| ||||||||||| ||||||  |||||||    
T  43389191 aggtggcatttagggtgcaaaattgttaaatttgtgcaccatatacaaattataaatagttatttttgaccagtagattaaagagaaacatcaatcttat 43389290  T
Q  113 tatggtaaacctacactatatctttctcactttgtcttcaaccttcctaccatctctcttttcatcaccacccaccaccacatgcaaactcaacaacttc 212  Q
     ||||| | ||||||||||||| |||||  ||||||||||||||||||||||||||  |||||||||||||||||||||||| |||||||||||| ||||    
T  43389291 catggtcagcctacactatatcgttctcg-tttgtcttcaaccttcctaccatctc--ttttcatcaccacccaccaccacaagcaaactcaacagcttc 43389387  T
Q  213 ctccgtcggtgtcgcaaccattatcaaactctgaccatttgtttccagccagagatccacttgccagcgatggatttgagtggatcgaa 301  Q
    ||| | || ||  |||||| ||||| || |||||||||||||||||||||| |||||||||| ||  |||| |||||||||||||||||    
T  43389388 ctctgccgatggagcaaccgttatcgaaatctgaccatttgtttccagccaaagatccacttaccgacgatagatttgagtggatcgaa 43389476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 14 - 57
Target Start/End: Complemental strand, 35442615 - 35442571
Alignment:
Q  14 aggtggcatttaggatgcacaaat-ttaaatttgtgcaccataca 57  Q
    ||||||||||||||||||||||||  |||||||||||||||||||    
T  35442615 aggtggcatttaggatgcacaaataataaatttgtgcaccataca 35442571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 15 - 56
Target Start/End: Complemental strand, 34134158 - 34134116
Alignment:
Q  15 ggtggcatttaggatgcacaaat-ttaaatttgtgcaccatac 56  Q
    |||||||||||| |||||||||| |||||||||||||||||||    
T  34134158 ggtggcatttagcatgcacaaatgttaaatttgtgcaccatac 34134116  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 15 - 54
Target Start/End: Complemental strand, 49086230 - 49086190
Alignment:
Q  15 ggtggcatttaggatgcacaaat-ttaaatttgtgcaccat 54  Q
    ||||||||||||||||||||||| | |||||||||||||||    
T  49086230 ggtggcatttaggatgcacaaatgtaaaatttgtgcaccat 49086190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 141; Significance: 9e-74; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 141; E-Value: 9e-74
Query Start/End: Original strand, 62 - 301
Target Start/End: Original strand, 41706669 - 41706905
Alignment:
Q  62 ttataaatagttatttttgaccattagattaaagaaaaacattgatcttattatggtaaacctacactatatctttctcactttgtcttcaaccttccta 161  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| | ||||||||||||| ||||   |||||||||||||||||||    
T  41706669 ttataaatagttatttttgaccattagattaaagagaaacattgatcttattatggtcagcctacactatatcgttcttg-tttgtcttcaaccttccta 41706767  T
Q  162 ccatctctcttttcatcaccacccaccaccacatgcaaactcaacaacttcctccgtcggtgtcgcaaccattatcaaactctgaccatttgtttccagc 261  Q
     ||||||  |||||||||||||||||||||||| |||||||||||| ||||||| | || ||  |||||| ||||| || ||||||||||||||||||||    
T  41706768 acatctc--ttttcatcaccacccaccaccacaagcaaactcaacagcttcctctgacgatggagcaaccgttatcgaaatctgaccatttgtttccagc 41706865  T
Q  262 cagagatccacttgccagcgatggatttgagtggatcgaa 301  Q
    |  |||||||||||||| ||||||||||||||||||||||    
T  41706866 cgaagatccacttgccaacgatggatttgagtggatcgaa 41706905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 14 - 90
Target Start/End: Complemental strand, 41709640 - 41709562
Alignment:
Q  14 aggtggcatttaggatgcacaaat-ttaaatttgtgcaccatacataagttataa-atagttatttttgaccattagat 90  Q
    |||||||||||||| ||||||||| |||||||||||||||||||| ||||| ||| | | ||||||||| |||||||||    
T  41709640 aggtggcatttagggtgcacaaatgttaaatttgtgcaccatacacaagttttaataaaattatttttggccattagat 41709562  T

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Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 14 - 162
Target Start/End: Complemental strand, 41707478 - 41707328
Alignment:
Q  14 aggtggcatttaggatgcacaaatt--taaatttgtgcaccatacataagttataaatagttatttttgaccattagattaaagaaaaacattgatctta 111  Q
    |||||||||||||| | |||||| |  ||||||||||||||||||| |||||| | | | |||||||| |||||| |||| ||||  |||||| ||||||    
T  41707478 aggtggcatttagggttcacaaactattaaatttgtgcaccatacacaagttagagaaaattatttttaaccatttgatttaagaggaacattaatctta 41707379  T
Q  112 ttatggtaaacctacactatatctttctcactttgtcttcaaccttcctac 162  Q
    | || ||     ||||| |||| ||  |||||||||||||||| |||||||    
T  41707378 taatagtctgtgtacaccatatattcttcactttgtcttcaactttcctac 41707328  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 15 - 56
Target Start/End: Complemental strand, 9875412 - 9875370
Alignment:
Q  15 ggtggcatttaggatgcacaaat-ttaaatttgtgcaccatac 56  Q
    |||||||||||| |||||||||| |||||||||||||||||||    
T  9875412 ggtggcatttagcatgcacaaatgttaaatttgtgcaccatac 9875370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 15 - 63
Target Start/End: Original strand, 41708415 - 41708464
Alignment:
Q  15 ggtggcatttaggatgcacaaat-ttaaatttgtgcaccatacataagtt 63  Q
    |||||||||||| |||||||||| ||||||||||||||||| || |||||    
T  41708415 ggtggcatttagaatgcacaaatattaaatttgtgcaccatgcacaagtt 41708464  T

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Target: chr1 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 70 - 156
Target Start/End: Original strand, 41883031 - 41883117
Alignment:
Q  70 agttatttttgaccattagattaaagaaaaacattgatcttattatggtaaacctacactatatctttctcactttgtcttcaacct 156  Q
    ||||||||||   |||||||||||||| ||||||| || ||||||| ||  | | ||||||||||||||||||||||||||||||||    
T  41883031 agttatttttagtcattagattaaagagaaacatttattttattatagtctatccacactatatctttctcactttgtcttcaacct 41883117  T

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Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 14 - 63
Target Start/End: Original strand, 10459766 - 10459816
Alignment:
Q  14 aggtggcatttaggatgcacaaat-ttaaatttgtgcaccatacataagtt 63  Q
    |||||||||||||||||||||||| |||||||||||||||||||| |||||    
T  10459766 aggtggcatttaggatgcacaaatgttaaatttgtgcaccatacacaagtt 10459816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 15 - 63
Target Start/End: Complemental strand, 27969949 - 27969900
Alignment:
Q  15 ggtggcatttaggatgcacaaat-ttaaatttgtgcaccatacataagtt 63  Q
    |||||||||||||||||||||||  ||||||||||||||||||| |||||    
T  27969949 ggtggcatttaggatgcacaaatactaaatttgtgcaccatacacaagtt 27969900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 15 - 64
Target Start/End: Original strand, 8673661 - 8673711
Alignment:
Q  15 ggtggcatttaggatgcacaaat-ttaaatttgtgcaccatacataagtta 64  Q
    ||||||||||||| ||||||||  |||||||||||||||||||| ||||||    
T  8673661 ggtggcatttagggtgcacaaacattaaatttgtgcaccatacacaagtta 8673711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 19 - 63
Target Start/End: Complemental strand, 8674735 - 8674690
Alignment:
Q  19 gcatttaggatgcacaaat-ttaaatttgtgcaccatacataagtt 63  Q
    ||||||||||||||||||| ||| |||||||||||||||| |||||    
T  8674735 gcatttaggatgcacaaatgttagatttgtgcaccatacacaagtt 8674690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 81 - 161
Target Start/End: Original strand, 23373559 - 23373640
Alignment:
Q  81 accattagattaaagaaaaacattgatc-ttattatggtaaacctacactatatctttctcactttgtcttcaaccttccta 161  Q
    ||||||| || |||||  |||||||||| ||||||| ||   || ||||||||||| |||||||||||||||||||| ||||    
T  23373559 accattatataaaagaggaacattgatccttattatagtctgcccacactatatctctctcactttgtcttcaacctcccta 23373640  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000003; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 40 - 156
Target Start/End: Complemental strand, 17084059 - 17083942
Alignment:
Q  40 aaatttgtgcaccatacataagttata-aatagttatttttgaccattagattaaagaaaaacattgatcttattatggtaaacctacactatatctttc 138  Q
    |||||| ||||||||| | |||||||| || |||||||||| |||||||||||||| |  |||||| |||||||||| ||    ||| ||||||| | ||    
T  17084059 aaatttatgcaccatatacaagttatagaaaagttatttttaaccattagattaaaaaggaacattaatcttattatagtttgtctatactatatatctc 17083960  T
Q  139 tcactttgtcttcaacct 156  Q
    ||||||| ||||||||||    
T  17083959 tcactttttcttcaacct 17083942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 39 - 88
Target Start/End: Complemental strand, 17087784 - 17087735
Alignment:
Q  39 taaatttgtgcaccatacataagttataaatagttatttttgaccattag 88  Q
    ||||||| |||||||||||||||||||||| |||||||||| | ||||||    
T  17087784 taaatttatgcaccatacataagttataaaaagttatttttaaacattag 17087735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 39 - 88
Target Start/End: Complemental strand, 17095759 - 17095710
Alignment:
Q  39 taaatttgtgcaccatacataagttataaatagttatttttgaccattag 88  Q
    ||||||| |||||||||||||||||||||| |||||||||| | ||||||    
T  17095759 taaatttatgcaccatacataagttataaaaagttatttttaaacattag 17095710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 14 - 63
Target Start/End: Original strand, 47925546 - 47925596
Alignment:
Q  14 aggtggcatttaggatgcacaaat-ttaaatttgtgcaccatacataagtt 63  Q
    |||||||||||| | ||||||||| |||||||||||||||||||| |||||    
T  47925546 aggtggcatttaaggtgcacaaatgttaaatttgtgcaccatacacaagtt 47925596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 15 - 63
Target Start/End: Original strand, 21460130 - 21460179
Alignment:
Q  15 ggtggcatttaggatgcacaaat-ttaaatttgtgcaccatacataagtt 63  Q
    ||||||||||||||||||||||| ||||||||||| ||||| || |||||    
T  21460130 ggtggcatttaggatgcacaaatgttaaatttgtgtaccatgcacaagtt 21460179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 16 - 63
Target Start/End: Complemental strand, 19795323 - 19795275
Alignment:
Q  16 gtggcatttaggatgcacaaatt-taaatttgtgcaccatacataagtt 63  Q
    ||||||||||| |||||||| |  |||||||||||||||||||||||||    
T  19795323 gtggcatttagcatgcacaattgataaatttgtgcaccatacataagtt 19795275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 14 - 57
Target Start/End: Complemental strand, 45721570 - 45721526
Alignment:
Q  14 aggtggcatttaggatgcacaaat-ttaaatttgtgcaccataca 57  Q
    ||||||| ||||||||||||||||  |||||||||||||||||||    
T  45721570 aggtggcgtttaggatgcacaaataataaatttgtgcaccataca 45721526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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