View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9616_high_1 (Length: 562)
Name: NF9616_high_1
Description: NF9616
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9616_high_1 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 512; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 512; E-Value: 0
Query Start/End: Original strand, 25 - 562
Target Start/End: Complemental strand, 38152693 - 38152157
Alignment:
| Q |
25 |
taaagatgagaaagtcccaaaaagaataacttgtgaatcaaatagtaaagagtgtgttattcaattatctttctcatgatnnnnnnntcaattatctttt |
124 |
Q |
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| T |
38152693 |
taaagatgagaaagtcccaaaaagaataacttgtgaatcaaatagtaaagagtgtgttattcaattatctttctcatgataaaaaa-tcaattatctttt |
38152595 |
T |
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| Q |
125 |
cttttaatgcattagttaattttttatgaacataatgaattagttaattaaaagaacttaagaaaccaacaacatttgccactggtatgggatctcaatt |
224 |
Q |
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| T |
38152594 |
cttttaatgcattagttaattttttatgaacataatgaattagttaattaaaagaacttaagaaaccaacaacatttgccactggtatgggatctcaatt |
38152495 |
T |
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| Q |
225 |
tttagctgagaaattttattatgttgattgaagacagcaaggttacataacagccagcgaaaggacatcgtgtgtacctcactaagtggtcctgaatttg |
324 |
Q |
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| T |
38152494 |
tttagctgagaaattttattatgttgattgaagacagcaaggttacataacagccagcgaaaggacatcgtgtgtacctcactaagtggtcctgaatttg |
38152395 |
T |
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| Q |
325 |
cctttttattgggggtgattacatgtattcccttgcgcagccagtcatcataatggcttgctatgacggagtcagctgtgcagtctactaaaaccgtgtt |
424 |
Q |
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| T |
38152394 |
cctttttattgggggtgattacatgtattcccttgcgcagccagtcatcataatggcttgctatgacggagtcagctgtgcagtctactaaaaccgtgtt |
38152295 |
T |
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| Q |
425 |
tggtataacatgatttccgtgtacatgttgaacaaatttttccaaatcagccacttcacctttttcctctcgaatttctctccactttactaagtcgatt |
524 |
Q |
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| T |
38152294 |
tggtataacatgatttccgtgtacatgttgaacaaatttttccaaatcagccacttcacctttttcctctcgaatttctctccactttactaagtcgatt |
38152195 |
T |
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| Q |
525 |
cccctgcaataagaaactatagttcatcataactgaag |
562 |
Q |
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| T |
38152194 |
cccctgcaataagaaactatagttcatcataactgaag |
38152157 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 90; Significance: 3e-43; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 308 - 533
Target Start/End: Original strand, 35089533 - 35089758
Alignment:
| Q |
308 |
aagtggtcctgaatttgcctttttattgggggtgattacatgtattcccttgcgcagccagtcatcataatggcttgctatgacggagtcagctgtgcag |
407 |
Q |
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| T |
35089533 |
aagtggtcccgaatttgccttcttattgggggtaattacatgtattcctttgcacaaccactcatagtaatggccagcaatgatagaatcagccgtgcag |
35089632 |
T |
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| Q |
408 |
tctactaaaaccgtgtttggtataacatgatttccgtgtacatgttgaacaaatttttccaaatcagccacttcacctttttcctctcgaatttctctcc |
507 |
Q |
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| T |
35089633 |
tctactaatgccgtgtttggtataaaattatttccatgcacgtgctgagcaaatttttccaaattagccacttctcctctttcctcccgaagttctttcc |
35089732 |
T |
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| Q |
508 |
actttactaagtcgattcccctgcaa |
533 |
Q |
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| T |
35089733 |
actttgctaagtcaatacccctgcaa |
35089758 |
T |
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Back To:
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