View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9616_high_6 (Length: 377)

Name: NF9616_high_6
Description: NF9616
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9616_high_6
NF9616_high_6
[»] chr6 (49 HSPs)
chr6 (18-371)||(26876267-26876620)
chr6 (118-314)||(28795202-28795396)
chr6 (118-314)||(28789178-28789372)
chr6 (115-360)||(26952408-26952654)
chr6 (50-222)||(26625857-26626029)
chr6 (50-222)||(26731834-26732006)
chr6 (114-233)||(26649265-26649387)
chr6 (114-233)||(26755233-26755355)
chr6 (114-225)||(25485779-25485890)
chr6 (115-223)||(27608385-27608493)
chr6 (39-245)||(26886823-26887032)
chr6 (282-360)||(26887763-26887841)
chr6 (114-223)||(26805290-26805399)
chr6 (265-361)||(26638358-26638454)
chr6 (265-361)||(26744324-26744420)
chr6 (114-225)||(25513664-25513775)
chr6 (114-225)||(25547769-25547880)
chr6 (114-225)||(26145786-26145897)
chr6 (114-233)||(31287368-31287487)
chr6 (290-360)||(27715611-27715681)
chr6 (278-371)||(26808430-26808523)
chr6 (114-223)||(27681746-27681855)
chr6 (115-223)||(27695856-27695964)
chr6 (39-245)||(26851224-26851433)
chr6 (285-360)||(27590240-27590315)
chr6 (294-360)||(26805505-26805571)
chr6 (114-220)||(27601991-27602097)
chr6 (265-359)||(27657853-27657947)
chr6 (168-225)||(25491404-25491461)
chr6 (294-371)||(26851511-26851588)
chr6 (114-223)||(26961900-26962009)
chr6 (290-343)||(27608241-27608294)
chr6 (114-223)||(27674839-27674948)
chr6 (261-361)||(26626079-26626179)
chr6 (261-361)||(26732056-26732156)
chr6 (296-360)||(26962083-26962147)
chr6 (114-245)||(27662612-27662746)
chr6 (320-371)||(26649481-26649532)
chr6 (320-371)||(26755449-26755500)
chr6 (278-312)||(26658942-26658976)
chr6 (278-312)||(26764913-26764947)
chr6 (114-144)||(27590470-27590500)
chr6 (290-360)||(27681936-27682006)
chr6 (265-323)||(31290384-31290442)
chr6 (115-144)||(27715844-27715873)
chr6 (290-334)||(26058892-26058936)
chr6 (290-334)||(26078862-26078906)
chr6 (37-85)||(27602126-27602174)
chr6 (187-223)||(27658006-27658042)
[»] chr8 (2 HSPs)
chr8 (39-224)||(22023990-22024175)
chr8 (290-323)||(29270987-29271020)
[»] scaffold0277 (2 HSPs)
scaffold0277 (118-314)||(1864-2058)
scaffold0277 (118-314)||(10827-11021)
[»] scaffold0419 (1 HSPs)
scaffold0419 (118-233)||(10328-10443)
[»] chr1 (5 HSPs)
chr1 (114-371)||(28124731-28124998)
chr1 (114-245)||(28129898-28130029)
chr1 (115-241)||(26138790-26138916)
chr1 (112-223)||(265596-265707)
chr1 (282-360)||(265436-265514)
[»] chr2 (1 HSPs)
chr2 (61-245)||(17990390-17990574)
[»] chr4 (13 HSPs)
chr4 (269-361)||(18696560-18696652)
chr4 (269-349)||(18652647-18652727)
chr4 (269-349)||(18676729-18676809)
chr4 (173-245)||(18728784-18728856)
chr4 (269-349)||(18686778-18686858)
chr4 (173-223)||(18686919-18686969)
chr4 (173-223)||(18721384-18721434)
chr4 (173-245)||(18652763-18652838)
chr4 (173-245)||(18676845-18676920)
chr4 (38-79)||(18677014-18677055)
chr4 (38-83)||(18687059-18687104)
chr4 (173-245)||(18696688-18696763)
chr4 (269-349)||(18728668-18728748)
[»] scaffold0349 (2 HSPs)
scaffold0349 (290-360)||(16264-16334)
scaffold0349 (115-144)||(16072-16101)


Alignment Details
Target: chr6 (Bit Score: 350; Significance: 0; HSPs: 49)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 18 - 371
Target Start/End: Original strand, 26876267 - 26876620
Alignment:
Q  18 atatctagacatatggggaagcaatttaaaagttcttcccgaatgccttaatgaatgtcaccttcttagggccatcaatttgagtcgttgtgactatctt 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  26876267 atatctagacatatggggaagcaatttaaaagttcttcccgaatgccttaacgaatgtcaccttcttagggccatcaatttgagtcgttgtgactatctt 26876366  T
Q  118 gaggaaattagagggattccaccaaatatagaaaggctttctgcaaggcaatgcgaatcattgaatccatcaagtagaagaatgttatttagacaggttt 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26876367 gaggaaattagagggattccaccaaatatagaaaggctttctgcaaggcaatgcgaatcattgaatccatcaagtagaagaatgttatttagacaggttt 26876466  T
Q  218 gttgttttatcttgcactattatttgattttcatatctaatctatattgtaatatatcacatgctaaactaccagaaactacatgaggctggatgcacct 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26876467 gttgttttatcttgcactattatttgattttcatatctaatctatattgtaatatatcacatgctaaactaccagaaactacatgaggctggatgcacct 26876566  T
Q  318 atattcttctcccaaacggaacagaggggattccagactggttccaacaccaaa 371  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26876567 atattcttctcccaaacggaacagaggggattccagactggttccaacaccaaa 26876620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 118 - 314
Target Start/End: Original strand, 28795202 - 28795396
Alignment:
Q  118 gaggaaattagagggattccaccaaatatagaaaggctttctgcaaggcaatgcgaatcattgaatccatcaagtagaagaatgttatttagacaggttt 217  Q
    ||||||||||||||||||||||||||| | |||||||||||||||| |  |||| ||||||||| | | ||||||||||||||| |||| || |||||||    
T  28795202 gaggaaattagagggattccaccaaatcttgaaaggctttctgcaatgggatgcaaatcattgagttcctcaagtagaagaatgctattgagtcaggttt 28795301  T
Q  218 gttgttttatcttgcactattatttgattttcatatctaatctatattgtaatatatcacatgctaaactaccagaaactacatgaggctggatgca 314  Q
    |||||||||||||||| |||     |  || |||||  |||| ||| |||||||||||  || |||||||| ||||| |||||||||||||||||||    
T  28795302 gttgttttatcttgcaatat--agagtattacatatacaatcgataatgtaatatatcttattctaaactaacagaagctacatgaggctggatgca 28795396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 118 - 314
Target Start/End: Original strand, 28789178 - 28789372
Alignment:
Q  118 gaggaaattagagggattccaccaaatatagaaaggctttctgcaaggcaatgcgaatcattgaatccatcaagtagaagaatgttatttagacaggttt 217  Q
    ||||||||||||||||||||||||||| | | ||||||||||||||    |||| ||||||||| | | |||||||||| |||| |||| || |||||||    
T  28789178 gaggaaattagagggattccaccaaatcttgcaaggctttctgcaatcggatgcaaatcattgagttcctcaagtagaaaaatgctattgagtcaggttt 28789277  T
Q  218 gttgttttatcttgcactattatttgattttcatatctaatctatattgtaatatatcacatgctaaactaccagaaactacatgaggctggatgca 314  Q
    |||||||||||||||| |||   | |  || |||||  |||| ||| ||||| |||||  || |||||||| ||||| ||| |||||||||||||||    
T  28789278 gttgttttatcttgcaatat--atagtattacatatacaatcgataatgtaacatatcttattctaaactaacagaagctaaatgaggctggatgca 28789372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 115 - 360
Target Start/End: Original strand, 26952408 - 26952654
Alignment:
Q  115 cttgaggaaattagagggattccaccaaatatagaaaggctttctgcaaggcaatgcgaatcattgaatccatcaagtagaagaatgttatttagacagg 214  Q
    ||||||||||| |||||||||||||| ||| ||||||| |||||||||    | ||||| || |||| | |  |||||||||||||| |||| || ||||    
T  26952408 cttgaggaaatcagagggattccaccgaatctagaaagactttctgcagtagattgcgagtcgttgagttccgcaagtagaagaatgctattgagtcagg 26952507  T
Q  215 tttgttgtt---ttatcttgcactattatttgattttcatatctaatctatattgtaatatatcacatgctaaactaccagaaactacatgaggctggat 311  Q
    |||||||||   |||||||||| |||   | |  ||| |||| ||||| ||| | ||| |||||  || |||||||  ||||||||| |  |||||||||    
T  26952508 tttgttgttgttttatcttgcaatata--tagtatttgatatataatcgataatttaacatatcttattctaaacttacagaaactaaacaaggctggat 26952605  T
Q  312 gcacctatattcttctcccaaacggaacagaggggattccagactggtt 360  Q
    |||||||||||| | ||||||||  |||||||||||||||||| |||||    
T  26952606 gcacctatattcatttcccaaacaaaacagaggggattccagattggtt 26952654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 50 - 222
Target Start/End: Original strand, 26625857 - 26626029
Alignment:
Q  50 ttcttcccgaatgccttaatgaatgtcaccttcttagggccatcaatttgagtcgttgtgactatcttgaggaaattagagggattccaccaaatataga 149  Q
    ||||||| ||||||||||||||||||||||||||||||  | | |||||   | | || || | ||||||||||||||||||||||||||||||| || |    
T  26625857 ttcttcctgaatgccttaatgaatgtcaccttcttaggatccttaatttagatggctgcgagtctcttgaggaaattagagggattccaccaaatcta-a 26625955  T
Q  150 aaggctt-tctgcaaggcaatgcgaatcattgaatccatcaagtagaagaatgttatttagacaggtttgttgt 222  Q
    |   ||| ||||||| | |||||  |||||||| | | |||| ||||||||||||||| || ||||||||||||    
T  26625956 attacttgtctgcaacggaatgcttatcattgagttcctcaactagaagaatgttattaagtcaggtttgttgt 26626029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 50 - 222
Target Start/End: Original strand, 26731834 - 26732006
Alignment:
Q  50 ttcttcccgaatgccttaatgaatgtcaccttcttagggccatcaatttgagtcgttgtgactatcttgaggaaattagagggattccaccaaatataga 149  Q
    ||||||| ||||||||||||||||||||||||||||||  | | |||||   | | || || | ||||||||||||||||||||||||||||||| || |    
T  26731834 ttcttcctgaatgccttaatgaatgtcaccttcttaggatccttaatttagatggctgcgagtctcttgaggaaattagagggattccaccaaatcta-a 26731932  T
Q  150 aaggctt-tctgcaaggcaatgcgaatcattgaatccatcaagtagaagaatgttatttagacaggtttgttgt 222  Q
    |   ||| ||||||| | |||||  |||||||| | | |||| ||||||||||||||| || ||||||||||||    
T  26731933 attacttgtctgcaacggaatgcttatcattgagttcctcaactagaagaatgttattaagtcaggtttgttgt 26732006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 114 - 233
Target Start/End: Original strand, 26649265 - 26649387
Alignment:
Q  114 tcttgaggaaattagagggattccaccaaatatagaaaggctttctgcaaggcaatgcgaatcattgaatccatcaagtagaagaatgttatttagacag 213  Q
    ||||||||||||||| ||||||||||||||| |  || |||||||||||  |  ||| |||||||||| | | |||||||||||||||||||| || |||    
T  26649265 tcttgaggaaattagggggattccaccaaatcttaaatggctttctgcattgagatgtgaatcattgagttcctcaagtagaagaatgttattgagtcag 26649364  T
Q  214 gt---ttgttgttttatcttgca 233  Q
    ||   ||||||||||||||||||    
T  26649365 gttcgttgttgttttatcttgca 26649387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 114 - 233
Target Start/End: Original strand, 26755233 - 26755355
Alignment:
Q  114 tcttgaggaaattagagggattccaccaaatatagaaaggctttctgcaaggcaatgcgaatcattgaatccatcaagtagaagaatgttatttagacag 213  Q
    ||||||||||||||| ||||||||||||||| |  || |||||||||||  |  ||| |||||||||| | | |||||||||||||||||||| || |||    
T  26755233 tcttgaggaaattagggggattccaccaaatcttaaatggctttctgcattgagatgtgaatcattgagttcctcaagtagaagaatgttattgagtcag 26755332  T
Q  214 gt---ttgttgttttatcttgca 233  Q
    ||   ||||||||||||||||||    
T  26755333 gttcgttgttgttttatcttgca 26755355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 114 - 225
Target Start/End: Original strand, 25485779 - 25485890
Alignment:
Q  114 tcttgaggaaattagagggattccaccaaatatagaaaggctttctgcaaggcaatgcgaatcattgaatccatcaagtagaagaatgttatttagacag 213  Q
    ||||||||||||||||||||||||||||||| | |||||||||| |||||   | ||  | ||||||||| | ||||||| |||||||||| | || |||    
T  25485779 tcttgaggaaattagagggattccaccaaatcttgaaaggctttttgcaaacgagtgttattcattgaattcctcaagtataagaatgttaatgagtcag 25485878  T
Q  214 gtttgttgtttt 225  Q
    ||||||||||||    
T  25485879 gtttgttgtttt 25485890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 115 - 223
Target Start/End: Complemental strand, 27608493 - 27608385
Alignment:
Q  115 cttgaggaaattagagggattccaccaaatatagaaaggctttctgcaaggcaatgcgaatcattgaatccatcaagtagaagaatgttatttagacagg 214  Q
    |||||||||||||||||||||||||||||| |  || |||||||||||||  ||||| ||||||||| | | ||||||| ||||| |||| | || ||||    
T  27608493 cttgaggaaattagagggattccaccaaatcttaaatggctttctgcaagcgaatgcaaatcattgagttcctcaagtaaaagaaagttaatgagtcagg 27608394  T
Q  215 tttgttgtt 223  Q
    || ||||||    
T  27608393 ttagttgtt 27608385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 39 - 245
Target Start/End: Original strand, 26886823 - 26887032
Alignment:
Q  39 caatttaaaagttcttcccgaatgccttaatgaatgtcaccttcttagggccatcaatttgagtcgttgtgactatcttgaggaaattagagggattcca 138  Q
    |||||| ||| |||||||||| |||||||| ||||||||||||||||||    |  | |||| || |||  | | ||||||||||||||||||||| |||    
T  26886823 caatttcaaaattcttcccgagtgccttaaggaatgtcaccttcttaggatacttgaattgaatcattgcaagtctcttgaggaaattagagggatacca 26886922  T
Q  139 ccaaatatagaaaggctttctgcaaggcaatgcgaatcattgaatccatcaagtagaagaatgttatttagacaggtttg---ttgttttatcttgcact 235  Q
    |||||| |  ||   |||||||| |   ||||| | ||||||| | | |||||||||||||||||||| || ||||||||   ||||| ||||||||| |    
T  26886923 ccaaatcttaaagacctttctgctataaaatgccattcattgagttcctcaagtagaagaatgttattgagtcaggtttgtttttgttctatcttgcaat 26887022  T
Q  236 attatttgat 245  Q
    | ||||||||    
T  26887023 agtatttgat 26887032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 282 - 360
Target Start/End: Original strand, 26887763 - 26887841
Alignment:
Q  282 taaactaccagaaactacatgaggctggatgcacctatattcttctcccaaacggaacagaggggattccagactggtt 360  Q
    ||||||| ||||||||| ||||||||||||||||  |  ||||| |||||||||||| ||||||||||||||| |||||    
T  26887763 taaactaacagaaactatatgaggctggatgcacagagtttcttttcccaaacggaagagaggggattccagattggtt 26887841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 114 - 223
Target Start/End: Original strand, 26805290 - 26805399
Alignment:
Q  114 tcttgaggaaattagagggattccaccaaatatagaaaggctttctgcaaggcaatgcgaatcattgaatccatcaagtagaagaatgttatttagacag 213  Q
    ||||||||||||||||||||||||||| ||| || ||  ||||||||||     |||  ||||||||| | |||||||||||||||||||| | || |||    
T  26805290 tcttgaggaaattagagggattccaccgaatctaaaagagctttctgcagaaggatgtaaatcattgagttcatcaagtagaagaatgttaatgagtcag 26805389  T
Q  214 gtttgttgtt 223  Q
    ||||||||||    
T  26805390 gtttgttgtt 26805399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 265 - 361
Target Start/End: Original strand, 26638358 - 26638454
Alignment:
Q  265 tgtaatatatcacatgctaaactaccagaaactacatgaggctggatgcacctatattcttctcccaaacggaacagaggggattccagactggttc 361  Q
    |||||||||||  || |||||||| |||||||||||||| |||||||||||  |||||| | | |||| | ||||||||| ||||||||| ||||||    
T  26638358 tgtaatatatcttatactaaactaacagaaactacatgaagctggatgcactgatattcgttttccaaccagaacagaggagattccagattggttc 26638454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 265 - 361
Target Start/End: Original strand, 26744324 - 26744420
Alignment:
Q  265 tgtaatatatcacatgctaaactaccagaaactacatgaggctggatgcacctatattcttctcccaaacggaacagaggggattccagactggttc 361  Q
    |||||||||||  || |||||||| |||||||||||||| |||||||||||  |||||| | | |||| | ||||||||| ||||||||| ||||||    
T  26744324 tgtaatatatcttatactaaactaacagaaactacatgaagctggatgcactgatattcgttttccaaccagaacagaggagattccagattggttc 26744420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 114 - 225
Target Start/End: Original strand, 25513664 - 25513775
Alignment:
Q  114 tcttgaggaaattagagggattccaccaaatatagaaaggctttctgcaaggcaatgcgaatcattgaatccatcaagtagaagaatgttatttagacag 213  Q
    ||||||||||||||||||||||||||||||| | |||||||||| ||||    | ||  | ||||||| | | ||||||| |||||||||| | || |||    
T  25513664 tcttgaggaaattagagggattccaccaaatcttgaaaggctttttgcagacgagtgttattcattgagttcctcaagtataagaatgttaatgagtcag 25513763  T
Q  214 gtttgttgtttt 225  Q
    ||||||||||||    
T  25513764 gtttgttgtttt 25513775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 114 - 225
Target Start/End: Original strand, 25547769 - 25547880
Alignment:
Q  114 tcttgaggaaattagagggattccaccaaatatagaaaggctttctgcaaggcaatgcgaatcattgaatccatcaagtagaagaatgttatttagacag 213  Q
    ||||||||||||||||||||||||||||||| | |||||||||| ||||    | ||  | ||||||| | | ||||||| |||||||||| | || |||    
T  25547769 tcttgaggaaattagagggattccaccaaatcttgaaaggctttttgcagacgagtgttattcattgagttcctcaagtataagaatgttaatgagtcag 25547868  T
Q  214 gtttgttgtttt 225  Q
    ||||||||||||    
T  25547869 gtttgttgtttt 25547880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 114 - 225
Target Start/End: Original strand, 26145786 - 26145897
Alignment:
Q  114 tcttgaggaaattagagggattccaccaaatatagaaaggctttctgcaaggcaatgcgaatcattgaatccatcaagtagaagaatgttatttagacag 213  Q
    ||||||||||||||||||||||||||||||| | |||||||||| ||||    | ||  | ||||||| | | ||||||| |||||||||| | || |||    
T  26145786 tcttgaggaaattagagggattccaccaaatcttgaaaggctttgtgcagacgagtgttattcattgagttcctcaagtataagaatgttaatgagtcag 26145885  T
Q  214 gtttgttgtttt 225  Q
    ||||||||||||    
T  26145886 gtttgttgtttt 26145897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 114 - 233
Target Start/End: Original strand, 31287368 - 31287487
Alignment:
Q  114 tcttgaggaaattagagggattccaccaaatatagaaaggctttctgcaaggcaatgcgaatcattgaatccatcaagtagaagaatgttatttagacag 213  Q
    ||||||||||||||||||||||||||||||| | |||  |||||| ||     |||| ||||| |||| | | ||||||||||||||||||   || |||    
T  31287368 tcttgaggaaattagagggattccaccaaatcttgaagagctttccgcttataaatgtgaatcgttgagttcctcaagtagaagaatgttaacgagtcag 31287467  T
Q  214 gtttgttgttttatcttgca 233  Q
    |||||||||||| |||||||    
T  31287468 gtttgttgttttttcttgca 31287487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 290 - 360
Target Start/End: Complemental strand, 27715681 - 27715611
Alignment:
Q  290 cagaaactacatgaggctggatgcacctatattcttctcccaaacggaacagaggggattccagactggtt 360  Q
    |||||||||||| ||||||||||||||||||||    |||||||||||||||| ||||| ||||| |||||    
T  27715681 cagaaactacatcaggctggatgcacctatattaaattcccaaacggaacagatgggataccagattggtt 27715611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 278 - 371
Target Start/End: Original strand, 26808430 - 26808523
Alignment:
Q  278 atgctaaactaccagaaactacatgaggctggatgcacctatattcttctcccaaacggaacagaggggattccagactggttccaacaccaaa 371  Q
    ||||||||||| ||||| ||||||||||||| || |||| |||||  | | |||||  ||||||||||||||||||| |||||| | |||||||    
T  26808430 atgctaaactaacagaacctacatgaggctgtatccaccaatatttgtttgccaaaaagaacagaggggattccagattggttcgagcaccaaa 26808523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 114 - 223
Target Start/End: Original strand, 27681746 - 27681855
Alignment:
Q  114 tcttgaggaaattagagggattccaccaaatatagaaaggctttctgcaaggcaatgcgaatcattgaatccatcaagtagaagaatgttatttagacag 213  Q
    ||||||||||||||||||||||||||||||| || ||  ||||| ||| ||  | ||  ||||||||| | | |||||||||||||||||| | || |||    
T  27681746 tcttgaggaaattagagggattccaccaaatctaaaagagctttgtgctagatattgtaaatcattgagttcctcaagtagaagaatgttaatgagtcag 27681845  T
Q  214 gtttgttgtt 223  Q
    ||| ||||||    
T  27681846 gttagttgtt 27681855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 115 - 223
Target Start/End: Complemental strand, 27695964 - 27695856
Alignment:
Q  115 cttgaggaaattagagggattccaccaaatatagaaaggctttctgcaaggcaatgcgaatcattgaatccatcaagtagaagaatgttatttagacagg 214  Q
    |||||||||||||||||||||||||||||| | | ||| || | |||     ||||| ||||||||| | ||||| |||||||||||||| | || ||||    
T  27695964 cttgaggaaattagagggattccaccaaatcttggaagtctctatgcttatgaatgcaaatcattgagttcatcatgtagaagaatgttaatgagtcagg 27695865  T
Q  215 tttgttgtt 223  Q
    |||||||||    
T  27695864 tttgttgtt 27695856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 39 - 245
Target Start/End: Original strand, 26851224 - 26851433
Alignment:
Q  39 caatttaaaagttcttcccgaatgccttaatgaatgtcaccttcttagggccatcaatttgagtcgttgtgactatcttgaggaaattagagggattcca 138  Q
    |||||||||| |||||||||| ||||||| ||||||||||| ||||||||   |    |||  | | ||  | | |||||||||||||||||||||||||    
T  26851224 caatttaaaaattcttcccgagtgccttagtgaatgtcaccgtcttagggagcttgtattgtatggctgcaattttcttgaggaaattagagggattcca 26851323  T
Q  139 ccaaatatagaaaggctttctgcaaggcaatgcgaatcattgaatccatcaagtagaagaatgttatttagacaggtttg---ttgttttatcttgcact 235  Q
    || ||| || |    || |||||||   | ||| ||||||||| | | ||||| |||||||||||||| || ||||||||   ||||||||||||||| |    
T  26851324 ccgaatctaaattacctgtctgcaatagattgcaaatcattgagttcctcaagcagaagaatgttattgagtcaggtttgttattgttttatcttgcagt 26851423  T
Q  236 attatttgat 245  Q
    | ||||||||    
T  26851424 agtatttgat 26851433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 285 - 360
Target Start/End: Complemental strand, 27590315 - 27590240
Alignment:
Q  285 actaccagaaactacatgaggctggatgcacctatattcttctcccaaacggaacagaggggattccagactggtt 360  Q
    |||| ||| |||||||||||||| ||||||| ||| ||  | |||||||||||||||||||||| ||||| |||||    
T  27590315 actaacaggaactacatgaggctcgatgcacttatttttatttcccaaacggaacagaggggataccagattggtt 27590240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 294 - 360
Target Start/End: Original strand, 26805505 - 26805571
Alignment:
Q  294 aactacatgaggctggatgcacctatattcttctcccaaacggaacagaggggattccagactggtt 360  Q
    ||||||||||||||  ||| |||||| || || |||||||||||||||||||||| ||||| |||||    
T  26805505 aactacatgaggctcaatggacctattttgttttcccaaacggaacagaggggataccagattggtt 26805571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 114 - 220
Target Start/End: Complemental strand, 27602097 - 27601991
Alignment:
Q  114 tcttgaggaaattagagggattccaccaaatatagaaaggctttctgcaaggcaatgcgaatcattgaatccatcaagtagaagaatgttatttagacag 213  Q
    ||||||||||||||||||| ||||||||||| |  |||   ||  ||||| | | || |||||||||| | | |||||||||||||||||||| || |||    
T  27602097 tcttgaggaaattagagggtttccaccaaatcttaaaatatttcatgcaaaggactgtgaatcattgagttcctcaagtagaagaatgttattgagtcag 27601998  T
Q  214 gtttgtt 220  Q
    |||||||    
T  27601997 gtttgtt 27601991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 265 - 359
Target Start/End: Complemental strand, 27657947 - 27657853
Alignment:
Q  265 tgtaatatatcacatgctaaactaccagaaactacatgaggctggatgcacctatattcttctcccaaacggaacagaggggattccagactggt 359  Q
    |||||||||||  || |||||| | ||||| ||| |||| |||||||||||| |||||| | || |||||| || ||||||||||||||| ||||    
T  27657947 tgtaatatatcttattctaaacaaacagaacctaaatgatgctggatgcaccgatattcgtttctcaaacgtaaaagaggggattccagattggt 27657853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 168 - 225
Target Start/End: Complemental strand, 25491461 - 25491404
Alignment:
Q  168 atgcgaatcattgaatccatcaagtagaagaatgttatttagacaggtttgttgtttt 225  Q
    |||| ||||||||| | | |||||||||||||||||||| || |||||||||||||||    
T  25491461 atgcaaatcattgagttcctcaagtagaagaatgttattgagtcaggtttgttgtttt 25491404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 294 - 371
Target Start/End: Original strand, 26851511 - 26851588
Alignment:
Q  294 aactacatgaggctggatgcacctatattcttctcccaaacggaacagaggggattccagactggttccaacaccaaa 371  Q
    |||||||||| |||||||| ||| ||||| || | |||| ||||||||| ||||||||||| |||||| | |||||||    
T  26851511 aactacatgacgctggatgtaccaatattattttgccaagcggaacagaagggattccagattggttcgagcaccaaa 26851588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 114 - 223
Target Start/End: Original strand, 26961900 - 26962009
Alignment:
Q  114 tcttgaggaaattagagggattccaccaaatatagaaaggctttctgcaaggcaatgcgaatcattgaatccatcaagtagaagaatgttatttagacag 213  Q
    ||||||||||||||||||||||||||||||| | | | |||||||||||  |  ||| |||||||||| |     ||||||||||| | |||| || |||    
T  26961900 tcttgaggaaattagagggattccaccaaatcttggacggctttctgcattgagatgtgaatcattgagtttggaaagtagaagaaggctattgagtcag 26961999  T
Q  214 gtttgttgtt 223  Q
    ||||||||||    
T  26962000 gtttgttgtt 26962009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 290 - 343
Target Start/End: Complemental strand, 27608294 - 27608241
Alignment:
Q  290 cagaaactacatgaggctggatgcacctatattcttctcccaaacggaacagag 343  Q
    |||||||||||||||||||||||||||||| ||    |||||||||||||||||    
T  27608294 cagaaactacatgaggctggatgcacctattttgaattcccaaacggaacagag 27608241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #33
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 114 - 223
Target Start/End: Complemental strand, 27674948 - 27674839
Alignment:
Q  114 tcttgaggaaattagagggattccaccaaatatagaaaggctttctgcaaggcaatgcgaatcattgaatccatcaagtagaagaatgttatttagacag 213  Q
    ||||||||||||||||||||||||||||||| |  ||  |||||| |||   |||||  ||||||||| | | ||| |||||||||||||| | || |||    
T  27674948 tcttgaggaaattagagggattccaccaaatcttaaagagctttccgcatatcaatgtaaatcattgagttcctcatgtagaagaatgttaatgagtcag 27674849  T
Q  214 gtttgttgtt 223  Q
    ||| ||||||    
T  27674848 gttagttgtt 27674839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #34
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 261 - 361
Target Start/End: Original strand, 26626079 - 26626179
Alignment:
Q  261 atattgtaatatatcacatgctaaactaccagaaactacatgaggctggatgcacctatattcttctcccaaacggaacagaggggattccagactggtt 360  Q
    ||| ||||||||||   || |||||| | |||||| |||||||||||||||||||| |||||| | |||  ||||  | ||||||||||||||| |||||    
T  26626079 ataatgtaatatattttattctaaacaaacagaaagtacatgaggctggatgcaccaatattcgtttccataacgccaaagaggggattccagattggtt 26626178  T
Q  361 c 361  Q
    |    
T  26626179 c 26626179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #35
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 261 - 361
Target Start/End: Original strand, 26732056 - 26732156
Alignment:
Q  261 atattgtaatatatcacatgctaaactaccagaaactacatgaggctggatgcacctatattcttctcccaaacggaacagaggggattccagactggtt 360  Q
    ||| ||||||||||   || |||||| | |||||| |||||||||||||||||||| |||||| | |||  ||||  | ||||||||||||||| |||||    
T  26732056 ataatgtaatatattttattctaaacaaacagaaagtacatgaggctggatgcaccaatattcgtttccataacgccaaagaggggattccagattggtt 26732155  T
Q  361 c 361  Q
    |    
T  26732156 c 26732156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #36
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 296 - 360
Target Start/End: Original strand, 26962083 - 26962147
Alignment:
Q  296 ctacatgaggctggatgcacctatattcttctcccaaacggaacagaggggattccagactggtt 360  Q
    ||||||||||||||||||||| | |||  | ||||||||||||  |||||||||||||| |||||    
T  26962083 ctacatgaggctggatgcaccaagattagtttcccaaacggaagtgaggggattccagattggtt 26962147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #37
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 114 - 245
Target Start/End: Complemental strand, 27662746 - 27662612
Alignment:
Q  114 tcttgaggaaattagagggattccaccaaatatagaaaggctttctgcaaggcaatgcgaatcattgaatccatcaagtagaagaatgttatttagacag 213  Q
    ||||||||||||||||||||||||||| ||| ||  ||  |||| ||||     |||  ||||||||| | | |||||||||||||||||||| || |||    
T  27662746 tcttgaggaaattagagggattccacccaatctaacaaatctttatgcagaaggatgtaaatcattgagttcctcaagtagaagaatgttattgagtcag 27662647  T
Q  214 gtttg---ttgttttatcttgcactattatttgat 245  Q
    |||||   || ||||||||||||||  ||||||||    
T  27662646 gtttgtttttattttatcttgcactggtatttgat 27662612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #38
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 320 - 371
Target Start/End: Original strand, 26649481 - 26649532
Alignment:
Q  320 attcttctcccaaacggaacagaggggattccagactggttccaacaccaaa 371  Q
    |||||| | |||||||||| ||||||||||||||| |||||| |||||||||    
T  26649481 attcttatgccaaacggaatagaggggattccagattggttcgaacaccaaa 26649532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #39
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 320 - 371
Target Start/End: Original strand, 26755449 - 26755500
Alignment:
Q  320 attcttctcccaaacggaacagaggggattccagactggttccaacaccaaa 371  Q
    |||||| | |||||||||| ||||||||||||||| |||||| |||||||||    
T  26755449 attcttatgccaaacggaatagaggggattccagattggttcgaacaccaaa 26755500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #40
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 278 - 312
Target Start/End: Original strand, 26658942 - 26658976
Alignment:
Q  278 atgctaaactaccagaaactacatgaggctggatg 312  Q
    ||||||||||| |||||||||||||||||||||||    
T  26658942 atgctaaactaacagaaactacatgaggctggatg 26658976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #41
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 278 - 312
Target Start/End: Original strand, 26764913 - 26764947
Alignment:
Q  278 atgctaaactaccagaaactacatgaggctggatg 312  Q
    ||||||||||| |||||||||||||||||||||||    
T  26764913 atgctaaactaacagaaactacatgaggctggatg 26764947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #42
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 114 - 144
Target Start/End: Complemental strand, 27590500 - 27590470
Alignment:
Q  114 tcttgaggaaattagagggattccaccaaat 144  Q
    |||||||||||||||||||||||||||||||    
T  27590500 tcttgaggaaattagagggattccaccaaat 27590470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #43
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 290 - 360
Target Start/End: Original strand, 27681936 - 27682006
Alignment:
Q  290 cagaaactacatgaggctggatgcacctatattcttctcccaaacggaacagaggggattccagactggtt 360  Q
    ||||||||||||||||| ||||||||| | |||  | ||||||| |||| ||||||||| ||||| |||||    
T  27681936 cagaaactacatgaggcgggatgcaccaagatttatttcccaaatggaagagaggggataccagattggtt 27682006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #44
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 265 - 323
Target Start/End: Original strand, 31290384 - 31290442
Alignment:
Q  265 tgtaatatatcacatgctaaactaccagaaactacatgaggctggatgcacctatattc 323  Q
    |||||||||||  || |||||||| |||||||||||||||||| || |||||| |||||    
T  31290384 tgtaatatatcttattctaaactaacagaaactacatgaggctcgaggcacctgtattc 31290442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #45
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 115 - 144
Target Start/End: Complemental strand, 27715873 - 27715844
Alignment:
Q  115 cttgaggaaattagagggattccaccaaat 144  Q
    ||||||||||||||||||||||||||||||    
T  27715873 cttgaggaaattagagggattccaccaaat 27715844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #46
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 290 - 334
Target Start/End: Original strand, 26058892 - 26058936
Alignment:
Q  290 cagaaactacatgaggctggatgcacctatattcttctcccaaac 334  Q
    ||||||||||||||| ||||||||||| |||||||  ||||||||    
T  26058892 cagaaactacatgagtctggatgcacccatattctattcccaaac 26058936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #47
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 290 - 334
Target Start/End: Original strand, 26078862 - 26078906
Alignment:
Q  290 cagaaactacatgaggctggatgcacctatattcttctcccaaac 334  Q
    ||||||||||||||| ||||||||||| |||||||  ||||||||    
T  26078862 cagaaactacatgagtctggatgcacccatattctattcccaaac 26078906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #48
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 37 - 85
Target Start/End: Complemental strand, 27602174 - 27602126
Alignment:
Q  37 agcaatttaaaagttcttcccgaatgccttaatgaatgtcaccttctta 85  Q
    |||||||| ||| ||||||| || ||||||| |||||||||||||||||    
T  27602174 agcaatttcaaaattcttcctgagtgccttagtgaatgtcaccttctta 27602126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #49
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 187 - 223
Target Start/End: Complemental strand, 27658042 - 27658006
Alignment:
Q  187 tcaagtagaagaatgttatttagacaggtttgttgtt 223  Q
    |||| |||||||||||||||||| |||||||||||||    
T  27658042 tcaactagaagaatgttatttagtcaggtttgttgtt 27658006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 74; Significance: 7e-34; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 39 - 224
Target Start/End: Original strand, 22023990 - 22024175
Alignment:
Q  39 caatttaaaagttcttcccgaatgccttaatgaatgtcaccttcttagggccatcaatttgagtcgttgtgactatcttgaggaaattagagggattcca 138  Q
    |||||| ||| |||||||||| ||||||||||||||||||||| || |||   | ||||||  ||| ||  | | | |||||||||||||||||||||||    
T  22023990 caatttcaaaattcttcccgagtgccttaatgaatgtcaccttgtttgggttcttaatttggatcgctgcaaatctgttgaggaaattagagggattcca 22024089  T
Q  139 ccaaatatagaaaggctttctgcaaggcaatgcgaatcattgaatccatcaagtagaagaatgttatttagacaggtttgttgttt 224  Q
    |||||| | ||||||||||||||||   ||||| ||||||||| | | |||||||||||||||||||| || ||||||||||||||    
T  22024090 ccaaatcttgaaaggctttctgcaatagaatgcaaatcattgagttcctcaagtagaagaatgttattgagtcaggtttgttgttt 22024175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 290 - 323
Target Start/End: Complemental strand, 29271020 - 29270987
Alignment:
Q  290 cagaaactacatgaggctggatgcacctatattc 323  Q
    ||||||||||||||| ||||||||||||||||||    
T  29271020 cagaaactacatgagactggatgcacctatattc 29270987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0277 (Bit Score: 70; Significance: 2e-31; HSPs: 2)
Name: scaffold0277
Description:

Target: scaffold0277; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 118 - 314
Target Start/End: Complemental strand, 2058 - 1864
Alignment:
Q  118 gaggaaattagagggattccaccaaatatagaaaggctttctgcaaggcaatgcgaatcattgaatccatcaagtagaagaatgttatttagacaggttt 217  Q
    ||||||||||||||||||||||||||| | |||| ||||||||||| |  |||| ||||||||| | | ||||||||||||||| |||| || |||||||    
T  2058 gaggaaattagagggattccaccaaatcttgaaatgctttctgcaatgggatgcaaatcattgagttcttcaagtagaagaatgctattgagtcaggttt 1959  T
Q  218 gttgttttatcttgcactattatttgattttcatatctaatctatattgtaatatatcacatgctaaactaccagaaactacatgaggctggatgca 314  Q
    |||||||||||||||| |||   | |  || |||||  |||| ||| ||||| |||||  || |||||||| ||||| |||||||||||||||||||    
T  1958 gttgttttatcttgcaatat--atagtattacatatacaatcgataatgtaacatatcttattctaaactaacagaagctacatgaggctggatgca 1864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0277; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 118 - 314
Target Start/End: Complemental strand, 11021 - 10827
Alignment:
Q  118 gaggaaattagagggattccaccaaatatagaaaggctttctgcaaggcaatgcgaatcattgaatccatcaagtagaagaatgttatttagacaggttt 217  Q
    ||||||||||||||||||||||||||| | | ||||||||||||||    |||| ||||||||| | | |||||||||| |||| |||| || |||||||    
T  11021 gaggaaattagagggattccaccaaatcttgcaaggctttctgcaatcggatgcaaatcattgagttcctcaagtagaaaaatgctattgagtcaggttt 10922  T
Q  218 gttgttttatcttgcactattatttgattttcatatctaatctatattgtaatatatcacatgctaaactaccagaaactacatgaggctggatgca 314  Q
    |||||||||||||||| |||   | |  || |||||  |||| ||| ||||| |||||  || |||||||| ||||| ||| |||||||||||||||    
T  10921 gttgttttatcttgcaatat--atagtattacatatacaatcgataatgtaacatatcttattctaaactaacagaagctaaatgaggctggatgca 10827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0419 (Bit Score: 64; Significance: 7e-28; HSPs: 1)
Name: scaffold0419
Description:

Target: scaffold0419; HSP #1
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 118 - 233
Target Start/End: Original strand, 10328 - 10443
Alignment:
Q  118 gaggaaattagagggattccaccaaatatagaaaggctttctgcaaggcaatgcgaatcattgaatccatcaagtagaagaatgttatttagacaggttt 217  Q
    |||||||||||||||||| |||||||| | |||||||||||||||| |  |||| ||||||||| | | ||||||||||||||| |||| || |||||||    
T  10328 gaggaaattagagggattgcaccaaatcttgaaaggctttctgcaatgggatgcaaatcattgagttcctcaagtagaagaatgctattgagtcaggttt 10427  T
Q  218 gttgttttatcttgca 233  Q
    ||||||||||||||||    
T  10428 gttgttttatcttgca 10443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 64; Significance: 7e-28; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 114 - 371
Target Start/End: Complemental strand, 28124998 - 28124731
Alignment:
Q  114 tcttgaggaaattagagggattccaccaaatatagaaaggctttctgcaaggcaatgcgaatcattgaatccatcaagtagaagaatgttatttagacag 213  Q
    ||||||||||||||||||||||||||||||  || || || ||||||||| || ||| |||||||| | | | ||| ||||||||||| |||| || |||    
T  28124998 tcttgaggaaattagagggattccaccaaacctaaaatggttttctgcaatgcgatgtgaatcattaacttcctcatgtagaagaatgctattgagccag 28124899  T
Q  214 gtttgttgttttatcttgcactattatttgat-------tttcatatctaatctatattgtaa---tatatcacatgctaaactaccagaaactacatga 303  Q
    |||||||||||| |||||||||| ||||||||       |||||||| ||||| ||   ||||   |||||   |||| |||||| |||||||||| |||    
T  28124898 gtttgttgttttttcttgcactagtatttgatatacaggtttcatatataatccatcgcgtaatattatattttatgccaaactaacagaaactacttga 28124799  T
Q  304 ggctggatgcacctatattcttctcccaaacggaacagaggggattccagactggttccaacaccaaa 371  Q
    |||||||||||   | |||  | | |||| |||||| ||||||||||| || ||||||||||||||||    
T  28124798 ggctggatgcattgagatttgtttgccaaccggaactgaggggattcctgattggttccaacaccaaa 28124731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 114 - 245
Target Start/End: Complemental strand, 28130029 - 28129898
Alignment:
Q  114 tcttgaggaaattagagggattccaccaaatatagaaaggctttctgcaaggcaatgcgaatcattgaatccatcaagtagaagaatgttatttagacag 213  Q
    ||||||||||||||||||| ||||||||||  || || || ||||||||| || ||| |||||||| | | | ||| ||||||||||| |||| || |||    
T  28130029 tcttgaggaaattagagggtttccaccaaacctaaaacggttttctgcaatgcgatgtgaatcattaacttcctcatgtagaagaatgctattgagtcag 28129930  T
Q  214 gtttgttgttttatcttgcactattatttgat 245  Q
    |||||||||||| |||||||||| ||||||||    
T  28129929 gtttgttgttttttcttgcactaatatttgat 28129898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 115 - 241
Target Start/End: Original strand, 26138790 - 26138916
Alignment:
Q  115 cttgaggaaattagagggattccaccaaatatagaaaggctttctgcaaggcaatgcgaatcattgaatccatcaagtagaagaatgttatttagacagg 214  Q
    ||||||||||||| |||||||||||||||| || ||| | |||||||||  |||||| | ||||||| | | ||| ||| ||| |||||||| || ||||    
T  26138790 cttgaggaaattaaagggattccaccaaatctaaaaaagttttctgcaatacaatgcaagtcattgacttcctcatgtataaggatgttattgagtcagg 26138889  T
Q  215 tttgttgttttatcttgcactattatt 241  Q
    |||||| |||| |||||||||| ||||    
T  26138890 tttgttattttttcttgcactagtatt 26138916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 112 - 223
Target Start/End: Complemental strand, 265707 - 265596
Alignment:
Q  112 tatcttgaggaaattagagggattccaccaaatatagaaaggctttctgcaaggcaatgcgaatcattgaatccatcaagtagaagaatgttatttagac 211  Q
    ||||||||||||||||||||||||||||||||| |  ||  ||||| |||     ||||| | ||||||| | | ||||||| |||||||||||| || |    
T  265707 tatcttgaggaaattagagggattccaccaaatcttaaagagctttttgcgtatgaatgcaactcattgagttcctcaagtaaaagaatgttattgagtc 265608  T
Q  212 aggtttgttgtt 223  Q
    ||||||||||||    
T  265607 aggtttgttgtt 265596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 282 - 360
Target Start/End: Complemental strand, 265514 - 265436
Alignment:
Q  282 taaactaccagaaactacatgaggctggatgcacctatattcttctcccaaacggaacagaggggattccagactggtt 360  Q
    ||||||| |||||||||||||| ||| ||||||| ||| |   | |||||||||||||||||||||| ||||| |||||    
T  265514 taaactaacagaaactacatgaagctcgatgcacttatttgtatttcccaaacggaacagaggggataccagattggtt 265436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 61; Significance: 4e-26; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 61 - 245
Target Start/End: Complemental strand, 17990574 - 17990390
Alignment:
Q  61 tgccttaatgaatgtcaccttcttagggccatcaatttgagtcgttgtgactatcttgaggaaattagagggattccaccaaatatagaaaggctttctg 160  Q
    |||||||| ||||||||||||||||||| | | || |||  | ||||||| |||||||||||||||| |||||||||||| ||| | ||||   | ||||    
T  17990574 tgccttaacgaatgtcaccttcttagggtccttaaattggatggttgtgaatatcttgaggaaattaaagggattccaccgaatcttgaaaaaatatctg 17990475  T
Q  161 caaggcaatgcgaatcattgaatccatcaagtagaagaatgttatttagacaggtttgttgttttatcttgcactattatttgat 245  Q
    |||   | ||| ||||||||| | | |||||||||||||| ||| |||| ||||||||||| |||||||||| ||| ||||||||    
T  17990474 caatagagtgcaaatcattgatttcctcaagtagaagaattttacttagtcaggtttgttgctttatcttgcgctaatatttgat 17990390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 269 - 361
Target Start/End: Complemental strand, 18696652 - 18696560
Alignment:
Q  269 atatatcacatgctaaactaccagaaactacatgaggctggatgcaccta-tattcttctcccaaacggaacagaggggattccagactggttc 361  Q
    |||||||  ||||||||||| ||| || ||||||||||||| |||||| | | ||||| |||||||||||||||||||||||||||| ||||||    
T  18696652 atatatcttatgctaaactaacagcaattacatgaggctgggtgcaccaaattttctt-tcccaaacggaacagaggggattccagattggttc 18696560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 269 - 349
Target Start/End: Complemental strand, 18652727 - 18652647
Alignment:
Q  269 atatatcacatgctaaactaccagaaactacatgaggctggatgcacctatattcttctcccaaacggaacagaggggatt 349  Q
    |||||||  ||||||||||| ||| || ||||||||||||| |||||| |||||  | |||||||||||||||||||||||    
T  18652727 atatatcttatgctaaactaacagcaattacatgaggctgggtgcaccaatatttgtttcccaaacggaacagaggggatt 18652647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 269 - 349
Target Start/End: Complemental strand, 18676809 - 18676729
Alignment:
Q  269 atatatcacatgctaaactaccagaaactacatgaggctggatgcacctatattcttctcccaaacggaacagaggggatt 349  Q
    |||||||  ||||||||||| ||| || ||||||||||||| |||||| |||||  | |||||||||||||||||| ||||    
T  18676809 atatatcttatgctaaactaacagcaattacatgaggctgggtgcaccaatatttgtttcccaaacggaacagaggagatt 18676729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 173 - 245
Target Start/End: Complemental strand, 18728856 - 18728784
Alignment:
Q  173 aatcattgaatccatcaagtagaagaatgttatttagacaggtttgttgttttatcttgcactattatttgat 245  Q
    ||||||||| | | |||| ||||||||||||||| || ||||||||||||||| ||||||| || ||||||||    
T  18728856 aatcattgagttcctcaactagaagaatgttattgagtcaggtttgttgttttttcttgcaatagtatttgat 18728784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 269 - 349
Target Start/End: Complemental strand, 18686858 - 18686778
Alignment:
Q  269 atatatcacatgctaaactaccagaaactacatgaggctggatgcacct-atattcttctcccaaacggaacagaggggatt 349  Q
    |||||||  ||||||||||| ||| || ||||||||||||| ||||||| || || || |||||||||||||||||||||||    
T  18686858 atatatcttatgctaaactaacagcaattacatgaggctgggtgcacctcattttatt-tcccaaacggaacagaggggatt 18686778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 173 - 223
Target Start/End: Complemental strand, 18686969 - 18686919
Alignment:
Q  173 aatcattgaatccatcaagtagaagaatgttatttagacaggtttgttgtt 223  Q
    ||||||||| | | |||||||||||||||||||| || |||||||||||||    
T  18686969 aatcattgagttcctcaagtagaagaatgttattgagtcaggtttgttgtt 18686919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 173 - 223
Target Start/End: Complemental strand, 18721434 - 18721384
Alignment:
Q  173 aatcattgaatccatcaagtagaagaatgttatttagacaggtttgttgtt 223  Q
    ||||||||| | | |||||||||||||||||||| || |||||||||||||    
T  18721434 aatcattgagttcctcaagtagaagaatgttattgagtcaggtttgttgtt 18721384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 173 - 245
Target Start/End: Complemental strand, 18652838 - 18652763
Alignment:
Q  173 aatcattgaatccatcaagtagaagaatgttatttagacaggtttgt---tgttttatcttgcactattatttgat 245  Q
    ||||||||| | | |||||||||||||||||||| || |||||||||   |||||| ||||||| || ||||||||    
T  18652838 aatcattgagttcctcaagtagaagaatgttattgagtcaggtttgttgttgttttttcttgcaatagtatttgat 18652763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 173 - 245
Target Start/End: Complemental strand, 18676920 - 18676845
Alignment:
Q  173 aatcattgaatccatcaagtagaagaatgttatttagacaggtttgt---tgttttatcttgcactattatttgat 245  Q
    ||||||||| | | |||||||||||||||||||| || |||||||||   |||||| ||||||| || ||||||||    
T  18676920 aatcattgagttcctcaagtagaagaatgttattgagtcaggtttgttgttgttttttcttgcaatagtatttgat 18676845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 38 - 79
Target Start/End: Complemental strand, 18677055 - 18677014
Alignment:
Q  38 gcaatttaaaagttcttcccgaatgccttaatgaatgtcacc 79  Q
    ||||||| ||| |||||||||| |||||||||||||||||||    
T  18677055 gcaatttcaaaattcttcccgagtgccttaatgaatgtcacc 18677014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 38 - 83
Target Start/End: Complemental strand, 18687104 - 18687059
Alignment:
Q  38 gcaatttaaaagttcttcccgaatgccttaatgaatgtcaccttct 83  Q
    ||||||| ||| |||||||||| ||||||| |||||||||||||||    
T  18687104 gcaatttcaaaattcttcccgagtgccttagtgaatgtcaccttct 18687059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 173 - 245
Target Start/End: Complemental strand, 18696763 - 18696688
Alignment:
Q  173 aatcattgaatccatcaagtagaagaatgttatttagacaggtttgt---tgttttatcttgcactattatttgat 245  Q
    ||||||||| | | |||||||||||||||||||| || |||||||||   |||||| ||||||| || ||||||||    
T  18696763 aatcattgagttcctcaagtagaagaatgttattgagtcaggtttgttgttgttttttcttgcaatagtatttgat 18696688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 269 - 349
Target Start/End: Complemental strand, 18728748 - 18728668
Alignment:
Q  269 atatatcacatgctaaactaccagaaactacatgaggctggatgcacctatattcttctcccaaacggaacagaggggatt 349  Q
    |||||||  ||||||||||| ||| || ||||||||||||| ||||||    || || |||||||||||||||||| ||||    
T  18728748 atatatcttatgctaaactaacagcaattacatgaggctgggtgcaccacatttgttttcccaaacggaacagaggtgatt 18728668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0349 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 2)
Name: scaffold0349
Description:

Target: scaffold0349; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 290 - 360
Target Start/End: Original strand, 16264 - 16334
Alignment:
Q  290 cagaaactacatgaggctggatgcacctatattcttctcccaaacggaacagaggggattccagactggtt 360  Q
    |||||||||||| ||||||||||||||||||||    |||||||||||||||| ||||| ||||| |||||    
T  16264 cagaaactacatcaggctggatgcacctatattaaattcccaaacggaacagatgggataccagattggtt 16334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0349; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 115 - 144
Target Start/End: Original strand, 16072 - 16101
Alignment:
Q  115 cttgaggaaattagagggattccaccaaat 144  Q
    ||||||||||||||||||||||||||||||    
T  16072 cttgaggaaattagagggattccaccaaat 16101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University