View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9616_high_7 (Length: 364)

Name: NF9616_high_7
Description: NF9616
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9616_high_7
NF9616_high_7
[»] chr4 (8 HSPs)
chr4 (38-335)||(22990246-22990545)
chr4 (38-335)||(22714680-22714979)
chr4 (34-335)||(28948933-28949236)
chr4 (34-340)||(22696864-22697172)
chr4 (34-355)||(46956533-46956859)
chr4 (281-355)||(28949216-28949290)
chr4 (281-355)||(22714959-22715033)
chr4 (281-355)||(22990192-22990266)
[»] chr7 (1 HSPs)
chr7 (34-355)||(20087585-20087908)
[»] scaffold0009 (2 HSPs)
scaffold0009 (38-335)||(200553-200862)
scaffold0009 (281-355)||(200842-200916)
[»] chr8 (1 HSPs)
chr8 (34-340)||(19646298-19646606)
[»] chr1 (1 HSPs)
chr1 (34-340)||(4344211-4344518)
[»] chr5 (1 HSPs)
chr5 (34-340)||(22808084-22808392)
[»] chr2 (1 HSPs)
chr2 (34-327)||(23362369-23362651)


Alignment Details
Target: chr4 (Bit Score: 246; Significance: 1e-136; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 38 - 335
Target Start/End: Complemental strand, 22990545 - 22990246
Alignment:
Q  38 ataagtgaaccaaaaatacgagcataattatcacacaacataagctttcgttaagggatagaaacattacataagttactggtacttcataagagtactt 137  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22990545 ataagtgaaccaaaaatacgagcataattatcacacaacataagctttcattaagggatagaaacattacataagttactggtacttcataagagtactt 22990446  T
Q  138 catagttactagcacttcttagattacttcctaattgaaaggcaaaacataacagtacttcatagttacaggtacttcctagattacttcttaatttaaa 237  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22990445 catagttactagcacttcttagattacttcctaattgaaaggcaaaacataacagtacttcatagttacaggtacttcctagattacttcttaatttaaa 22990346  T
Q  238 gacaacggaacattacaacattaaagactaaacataacaatacttcatag-tac--atcctagcttagattacttcttaattcatagtacttcctagctt 334  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||| |||  || ||  | ||||||||||||||||||||||||| ||||| |||    
T  22990345 gacaacggaacattacaacattaaagactaaacataacagtacttcatagttactaatact-tcctagattacttcttaattcatagtacatcctatctt 22990247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 38 - 335
Target Start/End: Original strand, 22714680 - 22714979
Alignment:
Q  38 ataagtgaaccaaaaatacgagcataattatcacacaacataagctttcgttaagggatagaaacattacataagttactggtacttcataagagtactt 137  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22714680 ataagtgaaccaaaaatacgagcataattatcacacaacataagctttcattaagggatagaaacattacataagttactggtacttcataagagtactt 22714779  T
Q  138 catagttactagcacttcttagattacttcctaattgaaaggcaaaacataacagtacttcatagttacaggtacttcctagattacttcttaatttaaa 237  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22714780 catagttactagcactttttagattacttcctaattgaaaggcaaaacataacagtacttcatagttacaggtacttcctagattacttcttaatttaaa 22714879  T
Q  238 gacaacggaacattacaacattaaagactaaacataacaatacttcatag-tac--atcctagcttagattacttcttaattcatagtacttcctagctt 334  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||| |||  || ||  | ||||||||||||||||||||||||| ||||| |||    
T  22714880 gacaacggaacattacaacattaaagactaaacataacagtacttcatagttactaatact-tcctagattacttcttaattcatagtacatcctatctt 22714978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 34 - 335
Target Start/End: Original strand, 28948933 - 28949236
Alignment:
Q  34 caacataagtgaaccaaaaatacgagcataattatcacacaacataagctttcgttaagggatagaaacattacataagttactggtacttcataagagt 133  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| | |||||||||||||||    
T  28948933 caacataagtgaaccaaaaatacgagcataattatcacacaacataagctttcattaagggatagaaacattacataagttatttgtacttcataagagt 28949032  T
Q  134 acttcatagttactagcacttcttagattacttcctaattgaaaggcaaaacataacagtacttcatagttacaggtacttcctagattacttcttaatt 233  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28949033 acttcatagttactagcactttttagattacttcctaattgaaaggcaaaacataacagtacttcatagttacaggtacttcctagattacttcttaatt 28949132  T
Q  234 taaagacaacggaacattacaacattaaagactaaacataacaatacttcatagtacatccta--gcttagattacttcttaattcatagtacttcctag 331  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||   |  ||   | ||||||||||||||||||||||||| ||||||    
T  28949133 taaagacaacggaacattacaacattaaagactaaacataacagtacttcatagttactattacttcctagattacttcttaattcatagtacatcctag 28949232  T
Q  332 ctta 335  Q
    ||||    
T  28949233 ctta 28949236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 34 - 340
Target Start/End: Complemental strand, 22697172 - 22696864
Alignment:
Q  34 caacataagtgaaccaaaaatacgagcataattatcacacaacataagctttcgttaagggatagaaacattacataagttactggtacttcataagagt 133  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||  ||| |||||||||||||||||||||||||||||| |||||||||||||||    
T  22697172 caacataagtgaaccataaatacgagcataattatcacacaacataagtcttcattaagggatagaaacattacataagttactagtacttcataagagt 22697073  T
Q  134 acttcatagttactagcacttcttagattacttcctaattgaaaggcaaaacataacagtacttcatagttacaggtacttcctagattacttcttaatt 233  Q
    ||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||| |||||| ||||||||||||||||||||||||||    
T  22697072 acttcatagttactaccacttcttagattacttcctaattgaaaggaaaaacataacagtacttcaaagttaccggtacttcctagattacttcttaatt 22696973  T
Q  234 taaagacaacggaacattacaacattaaagactaaacataacaatacttcatagtacatccta--gcttagattacttcttaattcatagtacttcctag 331  Q
    |||||||||| || |||||||||||||||||||||||| || | |||||||||||   |  ||   | ||||||||||||||||||||||||||||||||    
T  22696972 taaagacaacagagcattacaacattaaagactaaacaaaatagtacttcatagttactagtacttcgtagattacttcttaattcatagtacttcctag 22696873  T
Q  332 cttacttcc 340  Q
     ||| ||||    
T  22696872 gttaattcc 22696864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 34 - 355
Target Start/End: Complemental strand, 46956859 - 46956533
Alignment:
Q  34 caacataagtgaaccaaaaatacgagcataattatcacacaacataagctttcgttaagggatagaaacattacataagttactggtacttcataagagt 133  Q
    |||||||||||||| |||||||| ||||||||||||||||||||||||| ||| |||||| ||||||||||||||||||||||| ||||||||||| |||    
T  46956859 caacataagtgaacaaaaaatacaagcataattatcacacaacataagccttcattaaggtatagaaacattacataagttactagtacttcataatagt 46956760  T
Q  134 acttcatagttactagcacttcttagattacttcctaattgaaaggcaaaacataacagtacttcatagttacaggtacttcctagattacttcttaatt 233  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||  |||||||||||||||||||||||||    
T  46956759 acttcatagttactagcacttcttagattacttcctaattaaaaggcaaaacataacagtacttgatagttactagtacttcctagattacttcttaatt 46956660  T
Q  234 taaagacaacggaacattacaacattaaagacta---aacataacaatacttcatagtacatccta--gcttagattacttcttaattcatagtacttcc 328  Q
    |||||| || ||||||||||||||||||||||||   || |||||| | |||||||||   |  ||   | ||||||||||||||||||||||||||| |    
T  46956659 taaagataatggaacattacaacattaaagactaaataatataacagtgcttcatagttactagtacttcctagattacttcttaattcatagtactttc 46956560  T
Q  329 tagcttacttcctagtcacacaggttc 355  Q
    |||||||||||||||||||||||||||    
T  46956559 tagcttacttcctagtcacacaggttc 46956533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 281 - 355
Target Start/End: Original strand, 28949216 - 28949290
Alignment:
Q  281 ttcatagtacatcctagcttagattacttcttaattcatagtacttcctagcttacttcctagtcacacaggttc 355  Q
    ||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||| ||||||    
T  28949216 ttcatagtacatcctagcttagattgcttcttaactcatagtacttcctagcttacttcctagtcacataggttc 28949290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 281 - 355
Target Start/End: Original strand, 22714959 - 22715033
Alignment:
Q  281 ttcatagtacatcctagcttagattacttcttaattcatagtacttcctagcttacttcctagtcacacaggttc 355  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||| ||||| ||||||    
T  22714959 ttcatagtacatcctatcttagattacttcttaattcatagtacttcctaacttacttcctaatcacagaggttc 22715033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 281 - 355
Target Start/End: Complemental strand, 22990266 - 22990192
Alignment:
Q  281 ttcatagtacatcctagcttagattacttcttaattcatagtacttcctagcttacttcctagtcacacaggttc 355  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||| ||||| ||||||    
T  22990266 ttcatagtacatcctatcttagattacttcttaattcatagtacttcctaacttacttcctaatcacagaggttc 22990192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 34 - 355
Target Start/End: Complemental strand, 20087908 - 20087585
Alignment:
Q  34 caacataagtgaaccaaaaatacgagcataattatcacacaacataagctttcgttaagggatagaaacattacataagttactggtacttcataagagt 133  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||  ||| |||||||||||||||||||||||||||||| ||||||||||| |||    
T  20087908 caacataagtgaaccaaaaatacaagcataattatcacacaacataagtcttcattaagggatagaaacattacataagttactagtacttcataatagt 20087809  T
Q  134 acttcatagttactagcacttcttagattacttcctaattgaaaggcaaaacataacagtacttcatagttacaggtacttcctagattacttcttaatt 233  Q
    |||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||  |||||| ||||||||||||||||||    
T  20087808 acttcatagttactagtacttcttagattacttcctaattaaaaggcaaaacataacagtacttcatagttactagtactttctagattacttcttaatt 20087709  T
Q  234 taaagacaacggaacattacaacattaaagactaaacataacaatacttcatagtacatccta--gcttagattacttcttaattcatagtacttcctag 331  Q
    |||||| ||||||||||||||||||||||||||||| |||||| |||||||||||   |  ||   | |||||||||||||||||||||  |||||||||    
T  20087708 taaagataacggaacattacaacattaaagactaaatataacagtacttcatagttactagtacttcctagattacttcttaattcataagacttcctag 20087609  T
Q  332 cttacttcctagtcacacaggttc 355  Q
    ||||||||||||||||||| ||||    
T  20087608 cttacttcctagtcacacaagttc 20087585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 216; Significance: 1e-118; HSPs: 2)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 38 - 335
Target Start/End: Original strand, 200553 - 200862
Alignment:
Q  38 ataagtgaaccaaaaatacgagcataattatcacacaacataagctttcgttaagggatagaaacattacataagttactggtacttcataagagtactt 137  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  200553 ataagtgaaccaaaaatacgagcataattatcacacaacataagctttcattaagggatagaaacattacataagttactggtacttcataagagtactt 200652  T
Q  138 catagttactagcacttcttagattacttcctaattgaaaggcaaaacataac----------agtacttcatagttacaggtacttcctagattacttc 227  Q
    |||||||||||||||||||||||||| ||||||||||||||| ||||||||||          |||||||||||||||||||||||||||||||||||||    
T  200653 catagttactagcacttcttagattaattcctaattgaaaggaaaaacataacagtacttcatagtacttcatagttacaggtacttcctagattacttc 200752  T
Q  228 ttaatttaaagacaacggaacattacaacattaaagactaaacataacaatacttcatagtacatccta--gcttagattacttcttaattcatagtact 325  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||   |  ||   | |||||||||||||||||||||||||     
T  200753 ttaatttaaagacaacggaacattacaacattaaagactaaacataacagtacttcatagttactattacttcctagattacttcttaattcatagtaca 200852  T
Q  326 tcctagctta 335  Q
    ||||||||||    
T  200853 tcctagctta 200862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 281 - 355
Target Start/End: Original strand, 200842 - 200916
Alignment:
Q  281 ttcatagtacatcctagcttagattacttcttaattcatagtacttcctagcttacttcctagtcacacaggttc 355  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||    
T  200842 ttcatagtacatcctagcttagattacttcttaattcatagtacttcctagcttacttcctaatcacagaggttc 200916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 34 - 340
Target Start/End: Complemental strand, 19646606 - 19646298
Alignment:
Q  34 caacataagtgaaccaaaaatacgagcataattatcacacaacataagctttcgttaagggatagaaacattacataagttactggtacttcataagagt 133  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||  ||| |||||||||||||| |||||||||||||||||||||||||||||||    
T  19646606 caacataagtgaaccaaaaatacaagcataattatcacacaacataagtcttcattaagggatagaaatattacataagttactggtacttcataagagt 19646507  T
Q  134 acttcatagttactagcacttcttagattacttcctaattgaaaggcaaaacataacagtacttcatagttacaggtacttcctagattacttcttaatt 233  Q
    ||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||| ||||||| |||||| ||||||||||||||||||||||||||    
T  19646506 acttcatagttactaccacttcttagattacttcctaattgaaaggaaaaacataacaatacttcaaagttaccggtacttcctagattacttcttaatt 19646407  T
Q  234 taaagacaacggaacattacaacattaaagactaaacataacaatacttcatagtacatccta--gcttagattacttcttaattcatagtacttcctag 331  Q
    |||||||||| |||||||||||||||||||| ||||||||| | |||||||||||   |  ||   | ||||||||||||||||||||||||||||||||    
T  19646406 taaagacaacagaacattacaacattaaagattaaacataagagtacttcatagttactagtacttcgtagattacttcttaattcatagtacttcctag 19646307  T
Q  332 cttacttcc 340  Q
    |||| ||||    
T  19646306 cttaattcc 19646298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 206; Significance: 1e-112; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 34 - 340
Target Start/End: Complemental strand, 4344518 - 4344211
Alignment:
Q  34 caacataagtgaaccaaaaatacgagcataattatcacacaacataagctttcgttaagggatagaaacattacataagttactggtacttcataagagt 133  Q
    |||||||||||||| |||||||| ||||||||||||||||||||||||  ||| |||||||||||||||||||||||||||||| |||||||||||||||    
T  4344518 caacataagtgaacaaaaaatacaagcataattatcacacaacataagtcttcattaagggatagaaacattacataagttactagtacttcataagagt 4344419  T
Q  134 acttcatagttactagcacttcttagattacttcctaattgaaaggcaaaacataacagtacttcatagttacaggtacttcctagattacttcttaatt 233  Q
    ||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||| ||||||| |||||| ||||||||||||||||||||||||||    
T  4344418 acttcatagttactaccacttcttagattacttcctaattgaaaggaaaaacataacaatacttcaaagttactggtacttcctagattacttcttaatt 4344319  T
Q  234 taaagacaacggaacattacaacattaaagactaaacataacaatacttcatagtacatccta--gcttagattacttcttaattcatagtacttcctag 331  Q
    ||||||||||| ||||||| ||||||||||||||||||||||| |||||||||||   |  ||   | ||||||||||||||||||||||||||||||||    
T  4344318 taaagacaacgaaacatta-aacattaaagactaaacataacagtacttcatagttactagtacttcgtagattacttcttaattcatagtacttcctag 4344220  T
Q  332 cttacttcc 340  Q
    |||| ||||    
T  4344219 cttaattcc 4344211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 34 - 340
Target Start/End: Complemental strand, 22808392 - 22808084
Alignment:
Q  34 caacataagtgaaccaaaaatacgagcataattatcacacaacataagctttcgttaagggatagaaacattacataagttactggtacttcataagagt 133  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||  ||| |||||||||| ||| ||||||||||||||| |||||||||||||||    
T  22808392 caacataagtgaaccaaaaatacgagcataattatcacacaacataagtcttcattaagggataaaaaaattacataagttactagtacttcataagagt 22808293  T
Q  134 acttcatagttactagcacttcttagattacttcctaattgaaaggcaaaacataacagtacttcatagttacaggtacttcctagattacttcttaatt 233  Q
    ||||||| ||||||| |||||||||||||||||||||||||||| | |||| |||| ||||||||||||||||  |||||||||||||||||||||||||    
T  22808292 acttcatggttactaccacttcttagattacttcctaattgaaaagaaaaatataatagtacttcatagttactagtacttcctagattacttcttaatt 22808193  T
Q  234 taaagacaacggaacattacaacattaaagactaaacataacaatacttcatagtacatccta--gcttagattacttcttaattcatagtacttcctag 331  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||   |  ||   | ||||||||||||||||| ||||||||||||||    
T  22808192 taaagataacggaacattacaacattaaagactaaacataacaatacttcatagttactagtacttcatagattacttcttaatttatagtacttcctag 22808093  T
Q  332 cttacttcc 340  Q
    |||| ||||    
T  22808092 cttaattcc 22808084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 169; Significance: 1e-90; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 34 - 327
Target Start/End: Original strand, 23362369 - 23362651
Alignment:
Q  34 caacataagtgaaccaaaaatacgagcataattatcacacaacataagctttcgttaagggatagaaacattacataagttactggtacttcataagagt 133  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||  ||| |||||||||| |||||||||||||||||||             |||    
T  23362369 caacataagtgaaccaaaaatacgagcataattatcacacaacataagtcttcattaagggataaaaacattacataagttact-------------agt 23362455  T
Q  134 acttcatagttactagcacttcttagattacttcctaattgaaaggcaaaacataacagtacttcatagttacaggtacttcctagattacttcttaatt 233  Q
    ||||||| ||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||   |||||||||||||||||||||||||    
T  23362456 acttcatggttactaccacttcttagattacttcctaattgaaaggaaaaacataacagtacttcatagttattagtacttcctagattacttcttaatt 23362555  T
Q  234 taaagacaacggaacattacaacattaaagactaaacataacaatacttcatagtacatccta--gcttagattacttcttaattcatagtacttc 327  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||   |  ||   | ||||||||||||||||||||||||||||    
T  23362556 taaagacaacggaacattacaacattaaagactaaacataacaatacttaatagttactagtacttcgtagattacttcttaattcatagtacttc 23362651  T

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